Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00245 ATGGAGACTTCAAGTGTAAACTCCTCCTTCTTCATTTGCTTGTTGCTAATAGCAGGGTTTTCAGAACCTGTAGAAAGCCAGAGTAGCTGTCCAGAACCTGAAACAAGGTGTGGAAACCTTCGTGTTCGATTTCCTTTCCGAATAATCGGGCGCCAACCAGAAGTGTGTGGCTATCCTGGGTTTGGTTTACAATGTTCCGCTGCAAATCACCCTGTTTTTGAGCTGCCTCGCTCTGTCAAGCTCAATGTCAAACACATTGATTACACTTCCCAAATCATTCAACTATATGATCCTTATGGATGCCTCTCTCTGCATTTCCCTAACCTCACTCTTCCTCCTCCTCCCCCTTTCCAGCTCAAAGCCAGTTCGTCATATTTTGATCTTCATGATTATGATGATGACTTTACCATCTTCAATTGCTCGCAGCTGAAAAACTCCAATAAGGTTGTGAAATTCATCACAACATGCCTGAGCAGCTCTACCTATCAAGTATATGCCATTTCATCAGGCACACCCATCGGACAAATTCCCTTGTTGTCTTGCACCAAAGTGTTTAACATTTCATCCGTCACAGCAAAGATTTTTAGAGCTGATTACACTATTCATTTGAAGTGGTCTAATCCCATGTGCAAACGTTGCGAATCAACCGGAAGAAGATGCGGATTCAGGAATCGCAGCATTAGTTTGGAAACTGCATGCTTTGAAATAGATTCGTCGAACAAATTTTTAACCATAGGATTAACAGCGGGCTCATTTCTTCTGGCAGCAATTATTGTTGCCATTCATTACATCTTCAATTCATACAAATCACATAAAGAAAGCCAGGAAATAGTTGACAAATTTTTGAAAGATTATGCTGAACTGAGGCCCACCAGGTATTCTTATGCTGAAATTAAGAGAATTACCAATCAATTTAAAGACAAGTTGGGGGAAGGGTCGTTTGGTACTGTGTTCAAAGGAAACATTTCATCTGAATTCCAAGTTGCAGTGAAAATTCTTTCTGATTCTATAATAGGAAATGGTGAAGAGTTCATCATTGAAATTGGAATGATGGCCAAAGTCCATCATGTCAACATTACTCGCTTAGTTGGCTTTTGTGCCCAAGGTTTTAGAAGAGCACTTGTTTATGAGTACTTGCCAAATGGCTCATTACAAAATTTCATAAATTCACTAGGCCAAAGGAAAAACTTTATCAGCTGGACACAATTACAAGAAATTGCTTTAGGCATAGCCAAAGGAATTGAGTATCTTCACCATGGGTGTGAAAAGCGCATACTTCATTTTGATATAAAACCTCACAATGTTTTGTTAGATAGTGATTTTACTCCAAAAATATCTGATTTTGGATTGGCCAAATTATGTTCCAAAAATCAAAGTGTAGTGTCGATGACTAATGCCAGAGGAACTTTTGGCTATATGGCTCCTGAAATGTTCTTTCGAAACTTTGGAAATGTGTCACACAAAGCAGATGTTTATAGTTTTGGAATGTTGCTACTGGAAATGATAGGGGGGAGAAGGATCACCAATGATGCAGAAGAGGAAGCAGCCCACATTTACTATCCCAAATGGATCCATGATGTTTTAGAAGGAAGGAAGGATTTACGAATTCATGAGGACGAAGAGGATGCTATGATTGCAAAAAAATTAGGAATTGTTGGCCTGTGGTGCATCCAATGGCATGCTGTGGATCGACCATCAATGCAAGTAGTGGTTCAAATGTTAGAAGGACAAGAAGGCAAATTACCAATACCTCCTAATCCTTTTGACTCTGAAGGTCCTTCAACAAGTAACAGAGCCAATGTGCCTGCTAGACATGTGATGCAAGGTTTAGAAATAATCCAAGAAGCAGAGTGA 1854 0.3975 METSSVNSSFFICLLLIAGFSEPVESQSSCPEPETRCGNLRVRFPFRIIGRQPEVCGYPGFGLQCSAANHPVFELPRSVKLNVKHIDYTSQIIQLYDPYGCLSLHFPNLTLPPPPPFQLKASSSYFDLHDYDDDFTIFNCSQLKNSNKVVKFITTCLSSSTYQVYAISSGTPIGQIPLLSCTKVFNISSVTAKIFRADYTIHLKWSNPMCKRCESTGRRCGFRNRSISLETACFEIDSSNKFLTIGLTAGSFLLAAIIVAIHYIFNSYKSHKESQEIVDKFLKDYAELRPTRYSYAEIKRITNQFKDKLGEGSFGTVFKGNISSEFQVAVKILSDSIIGNGEEFIIEIGMMAKVHHVNITRLVGFCAQGFRRALVYEYLPNGSLQNFINSLGQRKNFISWTQLQEIALGIAKGIEYLHHGCEKRILHFDIKPHNVLLDSDFTPKISDFGLAKLCSKNQSVVSMTNARGTFGYMAPEMFFRNFGNVSHKADVYSFGMLLLEMIGGRRITNDAEEEAAHIYYPKWIHDVLEGRKDLRIHEDEEDAMIAKKLGIVGLWCIQWHAVDRPSMQVVVQMLEGQEGKLPIPPNPFDSEGPSTSNRANVPARHVMQGLEIIQEAE 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00245 617 FunFam PR5-like receptor kinase 379 585 - -
Accr10g00245 617 Pfam Wall-associated receptor kinase galacturonan-binding 30 97 IPR025287 GO:0030247
Accr10g00245 617 SMART serkin_6 303 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00245 617 ProSiteProfiles Protein kinase domain profile. 303 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00245 617 Gene3D Phosphorylase Kinase; domain 1 277 378 - -
Accr10g00245 617 FunFam serine/threonine-protein kinase PBS1-like 270 378 - -
Accr10g00245 617 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Accr10g00245 617 PANTHER RUST RESISTANCE KINASE LR10-RELATED 277 594 IPR045874 GO:0004672
Accr10g00245 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Accr10g00245 617 SUPERFAMILY Protein kinase-like (PK-like) 285 575 IPR011009 -
Accr10g00245 617 Gene3D Transferase(Phosphotransferase) domain 1 379 581 - -
Accr10g00245 617 Pfam Protein kinase domain 305 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00245 Accr-Chr10 4158088 4160190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00245 2 587 Receptor kinase-like Gene Family AT5G38260 36.026 3.20e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Accr10g00245 Pkinase 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00245 - - qsa:O6P43_019907 647.891