Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00216 ATGGCCATAAGGCCCTTCCATTTCACCTTCTCGCGTGATAGATTCCTTGCTCTTCTGCGCGCTCCTCCCCTTTCCAGTTCTTCATCTTCTTCGTCTTGTTCTTCTACCAGTGGCGCTTCTTCCTTTCTCTGGCGTTACAAACTTCCGTTTTCCTCTCGATTGTTTTCCCCTACTTGTGTGTTCCGTCGCTTCGCGGCGTTGGCGGCTACTCCCCTCTCACGCGCTCGCCAGTGCTATACGCCAACGCAACCACACGACGACCGCCTCCGGTCGTTGTCTCCATCCAACACTCTGGCGCAGAAGATTGGAAAAGCCACTCGCCGACCGGGCGCTGCCTCGAAGGCGAGGGTTTATGCTGATGTCAACGTTATCCGTCCCAAGGAATACTGGGATTATGAGTCGCTTACCGTCCAGTGGGGGGAGCAAGATGATTACGAGGTTTCGAGGAAGGTGGGAAGGGGGAAATACAGTGAGGTGTTTGAGGGCGTTCACTGCACGGATAATGAAAAGTGCATCATTAAGATTCTGAAACCAGTGAAGAAGAAGAAGATCAAGAGGGAGATCAAAATATTGCAGAATCTTTGTGGAGGGCCTAATATTGTAAAGTTGCTGGACATTGTTAGAGATCAGCAGTCAAAGACTCCTAGCCTTATTTTTGAATATGTCAACAACACTGATTTTAAAGTGCTCTATCCAACGCTGACAGACTATGACATACGATACTACATCTATGAGCTTCTAAAGGCCCTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCACATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAATTTTATCATCCTGGTAAAGAATATAATGTTCGAGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTTTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGCATGATTTTTCGTAAAGAGCCATTCTTTTATGGACATGATAATCATGATCAGCTGGTCAAAATTGCAAAAGTACTTGGGACAGATGAATTGAATGCATATTTGAACAAGTATCGGATAGAGTTGGACCCGAATCTTGCAGAACTTGTTGGAAGGCATAGTCGGAAGCCATGGACAAAGTTCATTAGCAGTGATAATCATCTCTTGGCTAATCCTGAGGCTATCGATTTTGTTGACAAGTTACTGCGGTATGATCACCTGGAACGACCCACCGCAAAAGAAGCCATGAGCCATCCTTACTTCAATCCTGTTAGAATGGCTGAAAGCAGCCAATCTCGCGCTCATTGA 1335 0.4554 MAIRPFHFTFSRDRFLALLRAPPLSSSSSSSSCSSTSGASSFLWRYKLPFSSRLFSPTCVFRRFAALAATPLSRARQCYTPTQPHDDRLRSLSPSNTLAQKIGKATRRPGAASKARVYADVNVIRPKEYWDYESLTVQWGEQDDYEVSRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYRIELDPNLAELVGRHSRKPWTKFISSDNHLLANPEAIDFVDKLLRYDHLERPTAKEAMSHPYFNPVRMAESSQSRAH 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00216 444 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524
Accr10g00216 444 PANTHER CASEIN KINASE II SUBUNIT ALPHA 102 440 IPR045216 GO:0004674|GO:0006468
Accr10g00216 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Accr10g00216 444 Gene3D Transferase(Phosphotransferase) domain 1 222 430 - -
Accr10g00216 444 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Accr10g00216 444 FunFam Casein kinase II subunit alpha 131 221 - -
Accr10g00216 444 FunFam Casein kinase II subunit alpha 222 433 - -
Accr10g00216 444 Gene3D Phosphorylase Kinase; domain 1 145 221 - -
Accr10g00216 444 Pfam Protein kinase domain 145 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00216 444 SMART serkin_6 145 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00216 444 SUPERFAMILY Protein kinase-like (PK-like) 118 435 IPR011009 -
Accr10g00216 444 ProSiteProfiles Protein kinase domain profile. 145 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00216 444 CDD STKc_CK2_alpha 126 430 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00216 Accr-Chr10 3908727 3915240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00216 143 431 Core Cell Cycle Gene Families AT1G76540 30.323 3.81e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Accr10g00216 Pkinase 2.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00216 K03097 - qsa:O6P43_024562 690.649