Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00203 ATGAGTTGCAACGGTTGCCGAGTTCTTCGAAAAGGATGCAGTGAAAACTGTATATTGCGACCTTGCTTGCAGTGGATCGATAACCCTCAGGCCCAAGGTCACGCCACTGTGTTCGTCGCTAAATTTTTTGGCCGTGCCGGTCTTATGTCTTTCATTTCTAACGTCCCTCCCAACCAGAGGCCTGCTCTGTTTCAGTCCTTGTTGTTCGAATCGTGCGGCCGGACGGTGAACCCTGTGAACGGAGCTGTCGGGCTTCTGTGGACGGGAAACTGGCACGTGTGCCAGGCGGCCGTGGAGACAGTGCTGCGCGGTGGCACGTTGAAGCCCATGCCGGAGCTTGTAGGCTTGAATGCCCCGGCTCCGGTTACGGATGAGGCATCCGAAGGGGAGGTCACGTGCAATGACATGTGGAGGATCCGAGATCCGAACTCGAATTTGCGATGTGATAACAAGGTCTCTCCAGGCAGCGGGCTCAGACTGTCCGATGACTCTGCCATGCTCCAGACGACCGATCTCGACCTCCGATTGACGCCAAGCTTCACTCATAAAGTTCCTGCCTACGGCTGCGGACCACAAGTCCGACGGCTGGGTTCGCCGTCGATGAACTCGGAAGAATCCGTCACGACGGCGACATGTTTGGAAAGCGGGATCAGAGATCACCACGCTCACGGCGGAGACGCGAAGCTTCTCAACCTTTTCATTTGA 705 0.5617 MSCNGCRVLRKGCSENCILRPCLQWIDNPQAQGHATVFVAKFFGRAGLMSFISNVPPNQRPALFQSLLFESCGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLKPMPELVGLNAPAPVTDEASEGEVTCNDMWRIRDPNSNLRCDNKVSPGSGLRLSDDSAMLQTTDLDLRLTPSFTHKVPAYGCGPQVRRLGSPSMNSEESVTTATCLESGIRDHHAHGGDAKLLNLFI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00203 234 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Accr10g00203 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 232 - -
Accr10g00203 234 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00203 Accr-Chr10 3652963 3653802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00203 1 233 AS2 family AT3G49940 55.039 3.70e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr10g00203 LOB 5.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00203 - - gmx:100816189 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g00203 10 3652963 3653802 Accr9g00426 9 4677503 4678309 CCT
Accr9g00426 9 4677503 4678309 Accr10g00203 10 3652963 3653802 ECH
Accr10g00203 10 3652963 3653802 Accr10g00203 10 3652963 3653802 ECH