Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00187 ATGGGAGACAATTGTGTGTCACCCTGCGCCTTGATGGATTCATCCATAGATTTTGATTACATGGACGATCTTTTCTCAGATGGATGCTGGCTGGAAGCCGCTGCAGATGGATCTGATTTCTTGCTGCCAAGCCCCACTGCGTCCAATTCCCTCCTTGACTCATCATTTTCATGGCCTGCCTTGGACACTAATGGGCATGTGAGTCTAGAACAAAGGAAGAGTCCGTTGATTGGCGACTACCAGGAAACACAAACCAATAATACTCGATCCGTTGGCAAGGGCAAGGACAAGGACAAGGACATGGTAGATGTTGCTGCGACCTGTAACCTGTCTGAAATTCGTTCAGCTGAAAGCTCTGCAGTCCTTAGGAGGTGGTGGATTGGACCTATGGCTAATCCAAGTCCTGAATGTTCTGTGTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTTCAATAGAGACATAGACATGCTTTTACAATTATGGGTGCCTGTTAATAGAGAGGGTGGGAGGATTCTAAGTACTCGTGATCTTCCGTTCTCACTTGAAAGCAGCAGTCCAAATCTTTCTAAGTATCGAGAAATCTCTGCCAAATATCATTTTCTAGCTGATGGATGTTATAGGGGGTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAGGTTCCTGAGTGGACCCCTGATGTTCGATTTTTCAGGAGCGACGAGTACCCTCGAGTTGACCATGCTCAACAGTATGATGTGCGTGGATCTTTAGCACTTCCAGTCTTTGAGAAAAGTAGCAACATTTGCTTGGGTGTTGTTGAGGTTGTAATGACAGCCCAGAAGATTAAGTATTTCCCCGAGCTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTGGATCTTAGGAGCAGAAATATCTTGAGTGTACAGGATGTGAAGGCATGCAACAATTCCTATGAAGCTGTACTGCCTGAGATCCAAGAGGTTTTGAGATTAGCATGTGAAATGCACAAATTACCTTTAGCTCAAACCTGGGCTCCTTGTATCAAGCAAGGCAAAGAGGGGTGCCGGCATACAGATGACAATTATCTACACTGTATATCTCCTGTTGAGCATGCTTGTTACGTTGGTGATCCTTGTTTCCAGGCTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAGGGTCAAGGTGTCACCGGTGAAGCTTTTATAACCAATGAACCATGCTTCTCAACTGATATAACTTCCTTTAGCAAGATAGATTATCCACTATCTCATCATGGAAGAATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTACGAAGCATCCATAACAGTACAGACGACTTTGTACTTGAGTTCTTCTTGCCTGTAAATTGCACCGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAGAGGGTTTGCTGTAGCCTGCGGGTGATTTCCAACAAAGAATTGGAGGAGGAAGCCAGCTTATCAATTGATGAAGTGACAGTCCCGGCAGAGAGTAGATCTGCTAGGATGGAGTTCCAACAATGCAGGAAGGTTGCTTCACATGGCACCAAAGAAAAGTCAAATGAAAATTTGACAAGACAGGTGTCTAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTTGACTGTGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTGCCAATTGCAGGTTCAAGTAAAACGGGTGACAAAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCGCCAATATTTTGCAGGAAGTCTAAAAGATGCTGCAAAGAATATTGGAGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCATCTCCAAATTTGCCGGGAAGCAGCTTGTTCTCAACTTCAAAACAAAGCAATCTTCCAAATCCATCAAGCACAGGGCCTGATGCTGGCTTGCTGAGCCCAGAAGCACCCTCATCTTCATGCGATCAAAGTTCCAGTTCAAGCCATTCCTCTTCCAACATGTCAGAGTTACAGCTTCATGCACAAAATGTTGCAGGTGGAAAAGCTCCTAGGTTTAGAGAAGATTCTGGTGATGGGGTTATGAAGAGGGTTCCAAGTGAAGTAGGGCTAAAAAGCTCAAGTCAAGATACAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAACACCTTGTGTACATCCAGAAACTGTGTTGAAAAGCGGTCATAATGTACATCAAAAAGAAGATACTCAGAGAGTAAAAGTCACTTTCAGAGAGGAGATAACCCGGTTTCGGATGCCAAAGAATTGGCGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGGTTCAACATAGATGACATGCGCAAATTCGATATCAAGTATCTGGATGATGACTCTGACTGGGTTTTGCTAACTTGTGATGCTGATTTAGAGGAGTGTATTGATGTTTGTCAACATTCTCAGAGCAGTACCATCAAGTTCTGCCTTCTGGATCGTAAATCATAG 2586 0.4381 MGDNCVSPCALMDSSIDFDYMDDLFSDGCWLEAAADGSDFLLPSPTASNSLLDSSFSWPALDTNGHVSLEQRKSPLIGDYQETQTNNTRSVGKGKDKDKDMVDVAATCNLSEIRSAESSAVLRRWWIGPMANPSPECSVLERLIKALVYIRDFNRDIDMLLQLWVPVNREGGRILSTRDLPFSLESSSPNLSKYREISAKYHFLADGCYRGLVPGLPGRVFKEKVPEWTPDVRFFRSDEYPRVDHAQQYDVRGSLALPVFEKSSNICLGVVEVVMTAQKIKYFPELESVCKALEAVDLRSRNILSVQDVKACNNSYEAVLPEIQEVLRLACEMHKLPLAQTWAPCIKQGKEGCRHTDDNYLHCISPVEHACYVGDPCFQAFHEACSEHHLLKGQGVTGEAFITNEPCFSTDITSFSKIDYPLSHHGRIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCTDSEEQKKMLTSLSMIIQRVCCSLRVISNKELEEEASLSIDEVTVPAESRSARMEFQQCRKVASHGTKEKSNENLTRQVSNLSQQEDSILKGNLDCGWECSSFGEGGLPIAGSSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKIDSFYSKFPELASPNLPGSSLFSTSKQSNLPNPSSTGPDAGLLSPEAPSSSCDQSSSSSHSSSNMSELQLHAQNVAGGKAPRFREDSGDGVMKRVPSEVGLKSSSQDTDTAELLPTSQSQETPCVHPETVLKSGHNVHQKEDTQRVKVTFREEITRFRMPKNWRYEDLLWEIAWRFNIDDMRKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKFCLLDRKS 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00187 861 SUPERFAMILY CAD & PB1 domains 770 858 - -
Accr10g00187 861 Gene3D - 772 856 - -
Accr10g00187 861 MobiDBLite consensus disorder prediction 732 757 - -
Accr10g00187 861 SMART PB1_new 776 859 IPR000270 GO:0005515
Accr10g00187 861 CDD PB1_NLP 778 856 IPR034891 -
Accr10g00187 861 MobiDBLite consensus disorder prediction 652 699 - -
Accr10g00187 861 MobiDBLite consensus disorder prediction 711 757 - -
Accr10g00187 861 MobiDBLite consensus disorder prediction 652 672 - -
Accr10g00187 861 PANTHER PROTEIN NLP8 82 856 IPR045012 GO:0003700
Accr10g00187 861 Pfam RWP-RK domain 586 634 IPR003035 -
Accr10g00187 861 ProSiteProfiles PB1 domain profile. 776 859 IPR000270 GO:0005515
Accr10g00187 861 MobiDBLite consensus disorder prediction 680 699 - -
Accr10g00187 861 ProSiteProfiles RWP-RK domain profile. 573 655 IPR003035 -
Accr10g00187 861 Pfam PB1 domain 777 855 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00187 Accr-Chr10 3353487 3356952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00187 12 853 NLP Transcription Factor Family AT1G76350 45.833 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Accr10g00187 PB1 2.2e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00187 - - gmx:100785135 1010.36