Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00186 ATGGGAGACAATTGTGTGTCACCCTGCGCCTTGATGGATTCATCCATAGATTTTGATTACATGGACGATCTTTTCTCAGATGGATGCTGGCTGGAAGCCGCTGCAGATGGATCTGATTTCTTGCTGCCAAGCCCCACTGCGTCCAATTCCCTCCTTGACTCATCATTTTCATGGCCTGCCTTGGACACTAATGGGCATGTGAGTCTAGAACAAAGGAAGAGTCCGTTGATTGGCGACTACCAGGAAACACAAACCAATAATACTCGATCCGTTGGCAAGGGCAAGGACAAGGACAAGGACATGGTAGATGTTGCTGCGACCTGTAACCTGTCTGAAATTCGTTCAGCTGAAAGCTCTGCAGTCCTTAGGAGGTGGTGGATTGGACCTATGGCTAATCCAAGTCCTGAATGTTCTGTGTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTTCAATAGAGACATAGACATGCTTTTACAATTATGGGTGCCTGTTAATAGAGAGGGTGGGAGGATTCTAAGTACTCGTGATCTTCCGTTCTCACTTGAAAGCAGCAGTCCAAATCTTTCTAAGTATCGAGAAATCTCTGCCAAATATCATTTTCTAGCTGATGGATGTTATAGGGGGTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAGGTTCCTGAGTGGACCCCTGATGTTCGATTTTTCAGGAGCGACGAGTACCCTCGAGTTGACCATGCTCAACAGTATGATGTGCGTGGATCTTTAGCACTTCCAGTCTTTGAGAAAAGTAGCAACATTTGCTTGGGTGTTGTTGAGGTTGTAATGACAGCCCAGAAGATTAAGTATTTCCCCGAGCTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTGGATCTTAGGAGCAGAAATATCTTGAGTGTACAGGATGTGAAGGCATGCAACAATTCCTATGAAGCTGTACTGCCTGAGATCCAAGAGGTTTTGAGATTAGCATGTGAAATGCACAAATTACCTTTAGCTCAAACCTGGGCTCCTTGTATCAAGCAAGGCAAAGAGGGGTGCCGGCATACAGATGACAATTATCTACACTGTATATCTCCTGTTGAGCATGCTTGTTACGTTGGTGATCCTTGTTTCCAGGCTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAGGGTCAAGGTGTCACCGGTGAAGCTTTTATAACCAATGAACCATGCTTCTCAACTGATATAACTTCCTTTAGCAAGATAGATTATCCACTATCTCATCATGGAAGAATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTACGAAGCATCCATAACAGTACAGACGACTTTGTACTTGAGTTCTTCTTGCCTGTAAATTGCACCGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAGAGGGTTTGCTGTAGCCTGCGGGTGATTTCCAACAAAGAATTGGAGGAGGAAGCCAGCTTATCAATTGATGAAGTGACAGTCCCGGCAGAGAGTAGATCTGCTAGGATGGAGTTCCAACAATGCAGGAAGGTTGCTTCACATGGCACCAAAGAAAAGTCAAATGAAAATTTGACAAGACAGGTGTCTAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTTGACTGTGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTGCCAATTGCAGGTTCAAGTAAAACGGGTGACAAAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCGCCAATATTTTGCAGGAAGTCTAAAAGATGCTGCAAAGAATATTGGAGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGTGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCATCTCCAAATTTGCCGGGAAGCAGCTTGTTCTCAACTTCAAAACAAAGCAATCTTCCAAATCCATCAAGCACAGGGCCTGATGCTGGCTTGCTGAGCCCAGAAGCACCCTCATCTTCATGCGATCAAAGTTCCAGTTCAAGCCATTCCTCTTCCAACATGTCAGAGTTACAGCTTCATGCACAAAATGTTGCAGGTGGAAAAGCTCCTAGGTTTAGAGAAGATTCTGGTGATGGGGTTATGAAGAGGGTTCCAAGTGAAGTAGGGCTAAAAAGCTCAAGTCAAGATACAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAACACCTTGTGTACATCCAGAAACTGTGTTGAAAAGCGGTCATAATGTACATCAAAAAGAAGATACTCAGAGAGTAAAAGTCACTTTCAGAGAGGAGATAACCCGGTTTCGGATGCCAAAGAATTGGCGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGGTTCAACATAGATGACATGCGCAAATTCGATATCAAGTATCTGGATGATGACTCTGACTGGGTTTTGCTAACTTGTGATGCTGATTTAGAGGAGTGTATTGATGTTTGTCAACATTCTCAGAGCAGTACCATCAAGTTCTGCCTTCTGGATCGTAAATCATAG 2655 0.4384 MGDNCVSPCALMDSSIDFDYMDDLFSDGCWLEAAADGSDFLLPSPTASNSLLDSSFSWPALDTNGHVSLEQRKSPLIGDYQETQTNNTRSVGKGKDKDKDMVDVAATCNLSEIRSAESSAVLRRWWIGPMANPSPECSVLERLIKALVYIRDFNRDIDMLLQLWVPVNREGGRILSTRDLPFSLESSSPNLSKYREISAKYHFLADGCYRGLVPGLPGRVFKEKVPEWTPDVRFFRSDEYPRVDHAQQYDVRGSLALPVFEKSSNICLGVVEVVMTAQKIKYFPELESVCKALEAVDLRSRNILSVQDVKACNNSYEAVLPEIQEVLRLACEMHKLPLAQTWAPCIKQGKEGCRHTDDNYLHCISPVEHACYVGDPCFQAFHEACSEHHLLKGQGVTGEAFITNEPCFSTDITSFSKIDYPLSHHGRIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCTDSEEQKKMLTSLSMIIQRVCCSLRVISNKELEEEASLSIDEVTVPAESRSARMEFQQCRKVASHGTKEKSNENLTRQVSNLSQQEDSILKGNLDCGWECSSFGEGGLPIAGSSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSNLPNPSSTGPDAGLLSPEAPSSSCDQSSSSSHSSSNMSELQLHAQNVAGGKAPRFREDSGDGVMKRVPSEVGLKSSSQDTDTAELLPTSQSQETPCVHPETVLKSGHNVHQKEDTQRVKVTFREEITRFRMPKNWRYEDLLWEIAWRFNIDDMRKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKFCLLDRKS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00186 884 MobiDBLite consensus disorder prediction 755 780 - -
Accr10g00186 884 MobiDBLite consensus disorder prediction 675 695 - -
Accr10g00186 884 SUPERFAMILY CAD & PB1 domains 793 881 - -
Accr10g00186 884 MobiDBLite consensus disorder prediction 675 722 - -
Accr10g00186 884 Pfam RWP-RK domain 586 634 IPR003035 -
Accr10g00186 884 SMART PB1_new 799 882 IPR000270 GO:0005515
Accr10g00186 884 Gene3D - 795 879 - -
Accr10g00186 884 MobiDBLite consensus disorder prediction 734 780 - -
Accr10g00186 884 ProSiteProfiles PB1 domain profile. 799 882 IPR000270 GO:0005515
Accr10g00186 884 MobiDBLite consensus disorder prediction 703 722 - -
Accr10g00186 884 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
Accr10g00186 884 CDD PB1_NLP 801 879 IPR034891 -
Accr10g00186 884 Pfam PB1 domain 800 878 IPR000270 GO:0005515
Accr10g00186 884 PANTHER PROTEIN NLP8 82 879 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00186 Accr-Chr10 3353487 3356952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00186 12 876 NLP Transcription Factor Family AT1G76350 48.136 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Accr10g00186 PB1 2.3e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00186 - - gmx:100785135 1063.91