Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00185 ATGGGAGACAATTGTGTGTCACCCTGCGCCTTGATGGATTCATCCATAGATTTTGATTACATGGACGATCTTTTCTCAGATGGATGCTGGCTGGAAGCCGCTGCAGATGGATCTGATTTCTTGCTGCCAAGCCCCACTGCGTCCAATTCCCTCCTTGACTCATCATTTTCATGGCCTGCCTTGGACACTAATGGGCATGTGAGTCTAGAACAAAGGAAGAGTCCGTTGATTGGCGACTACCAGGAAACACAAACCAATAATACTCGATCCGTTGGCAAGGGCAAGGACAAGGACAAGGACATGGTAGATGTTGCTGCGACCTGTAACCTGTCTGAAATTCGTTCAGCTGAAAGCTCTGCAGTCCTTAGGAGGTGGTGGATTGGACCTATGGCTAATCCAAGTCCTGAATGTTCTGTGTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTTCAATAGAGACATAGACATGCTTTTACAATTATGGGTGCCTGTTAATAGAGAGGGTGGGAGGATTCTAAGTACTCGTGATCTTCCGTTCTCACTTGAAAGCAGCAGTCCAAATCTTTCTAAGTATCGAGAAATCTCTGCCAAATATCATTTTCTAGCTGATGGATGTTATAGGGGGTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAGGTTCCTGAGTGGACCCCTGATGTTCGATTTTTCAGGAGCGACGAGTACCCTCGAGTTGACCATGCTCAACAGTATGATGTGCGTGGATCTTTAGCACTTCCAGTCTTTGAGAAAAGTAGCAACATTTGCTTGGGTGTTGTTGAGGTTGTAATGACAGCCCAGAAGATTAAGTATTTCCCCGAGCTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTGGATCTTAGGAGCAGAAATATCTTGAGTGTACAGGATGTGAAGCAGGCATGCAACAATTCCTATGAAGCTGTACTGCCTGAGATCCAAGAGGTTTTGAGATTAGCATGTGAAATGCACAAATTACCTTTAGCTCAAACCTGGGCTCCTTGTATCAAGCAAGGCAAAGAGGGGTGCCGGCATACAGATGACAATTATCTACACTGTATATCTCCTGTTGAGCATGCTTGTTACGTTGGTGATCCTTGTTTCCAGGCTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAGGGTCAAGGTGTCACCGGTGAAGCTTTTATAACCAATGAACCATGCTTCTCAACTGATATAACTTCCTTTAGCAAGATAGATTATCCACTATCTCATCATGGAAGAATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTACGAAGCATCCATAACAGTACAGACGACTTTGTACTTGAGTTCTTCTTGCCTGTAAATTGCACCGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAGAGGGTTTGCTGTAGCCTGCGGGTGATTTCCAACAAAGAATTGGAGGAGGAAGCCAGCTTATCAATTGATGAAGTGACAGTCCCGGCAGAGAGTAGATCTGCTAGGATGGAGTTCCAACAATGCAGGAAGGTTGCTTCACATGGCACCAAAGAAAAGTCAAATGAAAATTTGACAAGACAGGTGTCTAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTTGACTGTGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTGCCAATTGCAGGTTCAAGTAAAACGGGTGACAAAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCGCCAATATTTTGCAGGAAGTCTAAAAGATGCTGCAAAGAATATTGGAGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCATCTCCAAATTTGCCGGGAAGCAGCTTGTTCTCAACTTCAAAACAAAGCAATCTTCCAAATCCATCAAGCACAGGGCCTGATGCTGGCTTGCTGAGCCCAGAAGCACCCTCATCTTCATGCGATCAAAGTTCCAGTTCAAGCCATTCCTCTTCCAACATGTCAGAGTTACAGCTTCATGCACAAAATGTTGCAGGTGGAAAAGCTCCTAGGTTTAGAGAAGATTCTGGTGATGGGGTTATGAAGAGGGTTCCAAGTGAAGTAGGGCTAAAAAGCTCAAGTCAAGATACAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAACACCTTGTGTACATCCAGAAACTGTGTTGAAAAGCGGTCATAATGTACATCAAAAAGAAGATACTCAGAGAGTAAAAGTCACTTTCAGAGAGGAGATAACCCGGTTTCGGATGCCAAAGAATTGGCGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGGTTCAACATAGATGACATGCGCAAATTCGATATCAAGTATCTGGATGATGACTCTGACTGGGTTTTGCTAACTTGTGATGCTGATTTAGAGGAGTGTATTGATGTTTGTCAACATTCTCAGAGCAGTACCATCAAGTTCTGCCTTCTGGATCGTAAATCATAG 2589 0.4384 MGDNCVSPCALMDSSIDFDYMDDLFSDGCWLEAAADGSDFLLPSPTASNSLLDSSFSWPALDTNGHVSLEQRKSPLIGDYQETQTNNTRSVGKGKDKDKDMVDVAATCNLSEIRSAESSAVLRRWWIGPMANPSPECSVLERLIKALVYIRDFNRDIDMLLQLWVPVNREGGRILSTRDLPFSLESSSPNLSKYREISAKYHFLADGCYRGLVPGLPGRVFKEKVPEWTPDVRFFRSDEYPRVDHAQQYDVRGSLALPVFEKSSNICLGVVEVVMTAQKIKYFPELESVCKALEAVDLRSRNILSVQDVKQACNNSYEAVLPEIQEVLRLACEMHKLPLAQTWAPCIKQGKEGCRHTDDNYLHCISPVEHACYVGDPCFQAFHEACSEHHLLKGQGVTGEAFITNEPCFSTDITSFSKIDYPLSHHGRIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCTDSEEQKKMLTSLSMIIQRVCCSLRVISNKELEEEASLSIDEVTVPAESRSARMEFQQCRKVASHGTKEKSNENLTRQVSNLSQQEDSILKGNLDCGWECSSFGEGGLPIAGSSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKIDSFYSKFPELASPNLPGSSLFSTSKQSNLPNPSSTGPDAGLLSPEAPSSSCDQSSSSSHSSSNMSELQLHAQNVAGGKAPRFREDSGDGVMKRVPSEVGLKSSSQDTDTAELLPTSQSQETPCVHPETVLKSGHNVHQKEDTQRVKVTFREEITRFRMPKNWRYEDLLWEIAWRFNIDDMRKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKFCLLDRKS 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00185 862 MobiDBLite consensus disorder prediction 681 700 - -
Accr10g00185 862 ProSiteProfiles RWP-RK domain profile. 574 656 IPR003035 -
Accr10g00185 862 CDD PB1_NLP 779 857 IPR034891 -
Accr10g00185 862 ProSiteProfiles PB1 domain profile. 777 860 IPR000270 GO:0005515
Accr10g00185 862 MobiDBLite consensus disorder prediction 653 700 - -
Accr10g00185 862 SUPERFAMILY CAD & PB1 domains 771 859 - -
Accr10g00185 862 MobiDBLite consensus disorder prediction 653 673 - -
Accr10g00185 862 MobiDBLite consensus disorder prediction 733 758 - -
Accr10g00185 862 PANTHER PROTEIN NLP8 82 857 IPR045012 GO:0003700
Accr10g00185 862 Gene3D - 773 857 - -
Accr10g00185 862 Pfam RWP-RK domain 587 635 IPR003035 -
Accr10g00185 862 MobiDBLite consensus disorder prediction 712 758 - -
Accr10g00185 862 Pfam PB1 domain 778 856 IPR000270 GO:0005515
Accr10g00185 862 SMART PB1_new 777 860 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00185 Accr-Chr10 3353487 3356952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00185 12 854 NLP Transcription Factor Family AT1G76350 45.780 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Accr10g00185 PB1 2.2e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00185 - - gmx:100785135 1016.91