Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00184 ATGGGAGACAATTGTGTGTCACCCTGCGCCTTGATGGATTCATCCATAGATTTTGATTACATGGACGATCTTTTCTCAGATGGATGCTGGCTGGAAGCCGCTGCAGATGGATCTGATTTCTTGCTGCCAAGCCCCACTGCGTCCAATTCCCTCCTTGACTCATCATTTTCATGGCCTGCCTTGGACACTAATGGGCATGTGAGTCTAGAACAAAGGAAGAGTCCGTTGATTGGCGACTACCAGGAAACACAAACCAATAATACTCGATCCGTTGGCAAGGGCAAGGACAAGGACAAGGACATGGTAGATGTTGCTGCGACCTGTAACCTGTCTGAAATTCGTTCAGCTGAAAGCTCTGCAGTCCTTAGGAGGTGGTGGATTGGACCTATGGCTAATCCAAGTCCTGAATGTTCTGTGTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTTCAATAGAGACATAGACATGCTTTTACAATTATGGGTGCCTGTTAATAGAGAGGGTGGGAGGATTCTAAGTACTCGTGATCTTCCGTTCTCACTTGAAAGCAGCAGTCCAAATCTTTCTAAGTATCGAGAAATCTCTGCCAAATATCATTTTCTAGCTGATGGATGTTATAGGGGGTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAGGTTCCTGAGTGGACCCCTGATGTTCGATTTTTCAGGAGCGACGAGTACCCTCGAGTTGACCATGCTCAACAGTATGATGTGCGTGGATCTTTAGCACTTCCAGTCTTTGAGAAAAGTAGCAACATTTGCTTGGGTGTTGTTGAGGTTGTAATGACAGCCCAGAAGATTAAGTATTTCCCCGAGCTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTGGATCTTAGGAGCAGAAATATCTTGAGTGTACAGGATGTGAAGCAGGCATGCAACAATTCCTATGAAGCTGTACTGCCTGAGATCCAAGAGGTTTTGAGATTAGCATGTGAAATGCACAAATTACCTTTAGCTCAAACCTGGGCTCCTTGTATCAAGCAAGGCAAAGAGGGGTGCCGGCATACAGATGACAATTATCTACACTGTATATCTCCTGTTGAGCATGCTTGTTACGTTGGTGATCCTTGTTTCCAGGCTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAGGGTCAAGGTGTCACCGGTGAAGCTTTTATAACCAATGAACCATGCTTCTCAACTGATATAACTTCCTTTAGCAAGATAGATTATCCACTATCTCATCATGGAAGAATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTACGAAGCATCCATAACAGTACAGACGACTTTGTACTTGAGTTCTTCTTGCCTGTAAATTGCACCGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAGAGGGTTTGCTGTAGCCTGCGGGTGATTTCCAACAAAGAATTGGAGGAGGAAGCCAGCTTATCAATTGATGAAGTGACAGTCCCGGCAGAGAGTAGATCTGCTAGGATGGAGTTCCAACAATGCAGGAAGGTTGCTTCACATGGCACCAAAGAAAAGTCAAATGAAAATTTGACAAGACAGGTGTCTAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTTGACTGTGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTGCCAATTGCAGGTTCAAGTAAAACGGGTGACAAAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCGCCAATATTTTGCAGGAAGTCTAAAAGATGCTGCAAAGAATATTGGAGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGTGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCATCTCCAAATTTGCCGGGAAGCAGCTTGTTCTCAACTTCAAAACAAAGCAATCTTCCAAATCCATCAAGCACAGGGCCTGATGCTGGCTTGCTGAGCCCAGAAGCACCCTCATCTTCATGCGATCAAAGTTCCAGTTCAAGCCATTCCTCTTCCAACATGTCAGAGTTACAGCTTCATGCACAAAATGTTGCAGGTGGAAAAGCTCCTAGGTTTAGAGAAGATTCTGGTGATGGGGTTATGAAGAGGGTTCCAAGTGAAGTAGGGCTAAAAAGCTCAAGTCAAGATACAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAACACCTTGTGTACATCCAGAAACTGTGTTGAAAAGCGGTCATAATGTACATCAAAAAGAAGATACTCAGAGAGTAAAAGTCACTTTCAGAGAGGAGATAACCCGGTTTCGGATGCCAAAGAATTGGCGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGGTTCAACATAGATGACATGCGCAAATTCGATATCAAGTATCTGGATGATGACTCTGACTGGGTTTTGCTAACTTGTGATGCTGATTTAGAGGAGTGTATTGATGTTTGTCAACATTCTCAGAGCAGTACCATCAAGTTCTGCCTTCTGGATCGTAAATCATAG 2658 0.4387 MGDNCVSPCALMDSSIDFDYMDDLFSDGCWLEAAADGSDFLLPSPTASNSLLDSSFSWPALDTNGHVSLEQRKSPLIGDYQETQTNNTRSVGKGKDKDKDMVDVAATCNLSEIRSAESSAVLRRWWIGPMANPSPECSVLERLIKALVYIRDFNRDIDMLLQLWVPVNREGGRILSTRDLPFSLESSSPNLSKYREISAKYHFLADGCYRGLVPGLPGRVFKEKVPEWTPDVRFFRSDEYPRVDHAQQYDVRGSLALPVFEKSSNICLGVVEVVMTAQKIKYFPELESVCKALEAVDLRSRNILSVQDVKQACNNSYEAVLPEIQEVLRLACEMHKLPLAQTWAPCIKQGKEGCRHTDDNYLHCISPVEHACYVGDPCFQAFHEACSEHHLLKGQGVTGEAFITNEPCFSTDITSFSKIDYPLSHHGRIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCTDSEEQKKMLTSLSMIIQRVCCSLRVISNKELEEEASLSIDEVTVPAESRSARMEFQQCRKVASHGTKEKSNENLTRQVSNLSQQEDSILKGNLDCGWECSSFGEGGLPIAGSSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSNLPNPSSTGPDAGLLSPEAPSSSCDQSSSSSHSSSNMSELQLHAQNVAGGKAPRFREDSGDGVMKRVPSEVGLKSSSQDTDTAELLPTSQSQETPCVHPETVLKSGHNVHQKEDTQRVKVTFREEITRFRMPKNWRYEDLLWEIAWRFNIDDMRKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKFCLLDRKS 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00184 885 Pfam PB1 domain 801 879 IPR000270 GO:0005515
Accr10g00184 885 ProSiteProfiles PB1 domain profile. 800 883 IPR000270 GO:0005515
Accr10g00184 885 SMART PB1_new 800 883 IPR000270 GO:0005515
Accr10g00184 885 MobiDBLite consensus disorder prediction 676 696 - -
Accr10g00184 885 MobiDBLite consensus disorder prediction 676 723 - -
Accr10g00184 885 CDD PB1_NLP 802 880 IPR034891 -
Accr10g00184 885 MobiDBLite consensus disorder prediction 756 781 - -
Accr10g00184 885 MobiDBLite consensus disorder prediction 735 781 - -
Accr10g00184 885 Pfam RWP-RK domain 587 635 IPR003035 -
Accr10g00184 885 SUPERFAMILY CAD & PB1 domains 794 882 - -
Accr10g00184 885 PANTHER PROTEIN NLP8 82 880 IPR045012 GO:0003700
Accr10g00184 885 ProSiteProfiles RWP-RK domain profile. 574 655 IPR003035 -
Accr10g00184 885 MobiDBLite consensus disorder prediction 704 723 - -
Accr10g00184 885 Gene3D - 796 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00184 Accr-Chr10 3353487 3356952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00184 12 877 NLP Transcription Factor Family AT1G76350 48.081 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Accr10g00184 PB1 2.3e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00184 - - gmx:100785135 1070.46