Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00179 ATGTCTACTCAGGACGAACCGCTCCTTCTTGGCAGCCGGGAGGAGGAGGAGGCGCCGGAAACCGCCTACGATTCGTCGGAGAAGATCGTGGTCGTCGGGGTTGATGACGCCGTCGCTGATTCAGATAATTCCGGTCGGGCCCCGCCGTTCTCATGGCGGAAGCTCTGGCTCTTCACTGGCCCGGGCTTTCTTATGAGCATCGCGTTTCTAGATCCTGGGAATTTGGAGGGTGATCTTCAGTCTGGTGCTATTGCTGGCTACTCACTTCTATGGCTCCTCATGTGGGCGACGGCTATGGGACTTCTCGTTCAGCTTTTGTCTGCTCGGCTTGGCGTCGCCACCGGAAGGCACTTGGCTGAGCTCTGCAGAGAGGAGTACCCCACGTGGGCCAGATTGGTGCTCTGGTTTATGGCGGAGCTGGCTTTAATTGGGGCTGACATTCAAGAGGTTATTGGAAGTGCGATTGCTATTAGGATTCTAAGTAACGGATTTGTGCCTCTTTGGGCTGGGGTCGTCATCACAGCTTTGGATTGCTTTATCTTTCTTTTTCTGGAGAACTATGGCGTGAGGAAATTGGAAGCACTTTTTGCGGTTCTCATTGCTCTAATGGCGCTTTCATTTGCGTGGATGTTTGGCGAAGCAAAGCCCGATGGTTTAGATATTCTTCTAGGTCTTTTGGTTCCAAAACTTAGTTCCAGAACAATACAGCAGGCTGTTGCAGTTGTAGGCTGCATTATCATGCCCCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCGAGACAGATTGACTCAAGCAATAAGGGGCGAGTTCAGGAAGCTCTTAATTATTATACTATAGAATCGACTGTTGCACTTGCCGTCTCCTTGGTCATTAACATATTTGTCACAACTGTGTTTGCCAAGGGTTTCTATGGCACTGAACTAGCAAATTCCATTGGTCTTGAAAATGCAGGGCAGTATCTTCAGCAGAAGTATGGTGGTGGATTTTTTCCGATCTTATATATATGGGGTATCGGGTTACTAGCAGCTGGGCAAAGCAGCACCATTACTGGCACTTATGCCGGACAATTTATTATGGGGGGTTTTCTGAATCTAAGGTTAAAAAAATGGGTGAGGGCTTTAATTACACGAAGTTGTGCCATCATCCCAACCATAATCGTTGCTCTTGTCTTTGATACCTCTGAAGATTCATTAGATGTCCTAAACGAATGGCTCAATGTTCTTCAGTCAGTTCAAATACCCTTTGCCCTTATTCCCTTGCTTTGCTTGGTGTCCAAGGAGCAGTTGATGGGGACTTTCAGGATTGGCATCGTCCTCAAGAGTATTTCCTGGTTTGTGGCTGCTTTAGTGATAGTCATTAACGGCTATCTGTTGGTGGAATTCTTCTCCTCTGAAGTGAACGGACCAGTGGTTGTGACCATTGTGTCTGCATTTACAGTCATGTATGTTGTGTTCATAATCTACCTCGCTTCACGAATGATCACCTTCTCGCCGTGGCAGAGATTTTCGCAAACCAAGGCAAACACTAACACAGAATTGACAAATTGA 1551 0.4732 MSTQDEPLLLGSREEEEAPETAYDSSEKIVVVGVDDAVADSDNSGRAPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCREEYPTWARLVLWFMAELALIGADIQEVIGSAIAIRILSNGFVPLWAGVVITALDCFIFLFLENYGVRKLEALFAVLIALMALSFAWMFGEAKPDGLDILLGLLVPKLSSRTIQQAVAVVGCIIMPHNVFLHSALVQSRQIDSSNKGRVQEALNYYTIESTVALAVSLVINIFVTTVFAKGFYGTELANSIGLENAGQYLQQKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSCAIIPTIIVALVFDTSEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQLMGTFRIGIVLKSISWFVAALVIVINGYLLVEFFSSEVNGPVVVTIVSAFTVMYVVFIIYLASRMITFSPWQRFSQTKANTNTELTN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00179 516 Hamap Divalent metal cation transporter MntH [mntH]. 41 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 53 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 MobiDBLite consensus disorder prediction 9 23 - -
Accr10g00179 516 PRINTS Natural resistance-associated macrophage protein signature 373 390 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 PRINTS Natural resistance-associated macrophage protein signature 134 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 PRINTS Natural resistance-associated macrophage protein signature 164 183 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 PRINTS Natural resistance-associated macrophage protein signature 407 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 PRINTS Natural resistance-associated macrophage protein signature 189 210 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 PRINTS Natural resistance-associated macrophage protein signature 238 261 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 PRINTS Natural resistance-associated macrophage protein signature 345 364 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 NCBIfam Nramp family divalent metal transporter 60 430 - -
Accr10g00179 516 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 41 495 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 Pfam Natural resistance-associated macrophage protein 76 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr10g00179 516 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00179 Accr-Chr10 3261004 3263617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00179 35 500 Inorganic Solute Cotransporters AT2G23150 80.687 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00179 K21398 - gmx:100789871 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00401 9 4426759 4429846 Accr10g00179 10 3261004 3263617 CCT
Accr10g00179 10 3261004 3263617 Accr10g00179 10 3261004 3263617 ECH