Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00165 ATGAATATGGTCATTGATAGCAGGAAGGATATGGATCGGATCAAGGGTCCATGGAGCCCCGAAGAGGATGATGCCTTGCAGAAGCTGGTAGAAAAGCATGGACCCAGGAACTGGTCTCTAATCAGCAAGTCCATTCCGGGTCGGTCTGGCAAGTCTTGTCGGCTCCGATGGTGTAATCAACTTTCTCCTCAGGTGGAGCATCGACCTTTCTCGCCGGAAGAGGATGAGACTATTATTCGGGCTCATGCCCGATTCGGCAACAAATGGGCAACCATATCCCGGCTTCTGTCGGGTCGGACCGATAACGCCATCAAGAACCACTGGAACTCCACCTTGAAGCGCAAGTGTGCGTCCATGATGATGGATGAAACCATCGCCACTGGCGCTGCTGGTGGAGGATTCGACGGCAGTTTCAGCCCCCAGCCACTGAAGAGATCGGTGAGTGCCGGAGCTGCTATGCCGGTGTCGACCGGTTTTTACTTAAACCAGCAGACTCCGAGTAGCCCGTCCGGATCCGACGTCAGCGATTCCAGTGTGCCGGTAGGTTCTTCTTCGCATGTTTACCGGCCGGTGGCGAGAACCGGCGGAGTTCTACCTCCTGTAGAAACTACTTCGTCTTCAAATGAACTTACTACCTCATTATCCCTGTCACCTCCTGGTGTAGACTCTTTCGAAGTCTCAAATCGTGCTTCAGAATCAACACATGCTACTCCGTTAGCGAATACTGTTCGTTTATTACCGGCCATGGTTTCAGCCGTGGCGTCGTCCGCAGCTCCACCGCTTCCTTCGGTGTCGGCGCAGCAGCAGGCTCATATAGGCCTAGGTGATCGGAGGAGCGGTGATGGCGTGTCACAGGCGGCGAACACAAACAGGGCAGCTCCATTCAATTTCAGTGCAGAGTTGTTAGCTGTGATGCAAGAGATGATAAAAACAGAGGTGAGGAGTTATATGGCGGGACTAGAAAAGAGGAAGCTCATGGATTTGCGAACGCTTCAGTGA 999 0.5305 MNMVIDSRKDMDRIKGPWSPEEDDALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSPEEDETIIRAHARFGNKWATISRLLSGRTDNAIKNHWNSTLKRKCASMMMDETIATGAAGGGFDGSFSPQPLKRSVSAGAAMPVSTGFYLNQQTPSSPSGSDVSDSSVPVGSSSHVYRPVARTGGVLPPVETTSSSNELTTSLSLSPPGVDSFEVSNRASESTHATPLANTVRLLPAMVSAVASSAAPPLPSVSAQQQAHIGLGDRRSGDGVSQAANTNRAAPFNFSAELLAVMQEMIKTEVRSYMAGLEKRKLMDLRTLQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00165 332 CDD SANT 69 112 IPR001005 -
Accr10g00165 332 Gene3D - 14 66 - -
Accr10g00165 332 SMART sant 66 114 IPR001005 -
Accr10g00165 332 SMART sant 14 63 IPR001005 -
Accr10g00165 332 MobiDBLite consensus disorder prediction 1 20 - -
Accr10g00165 332 MobiDBLite consensus disorder prediction 259 286 - -
Accr10g00165 332 Pfam Myb-like DNA-binding domain 18 76 - -
Accr10g00165 332 FunFam Transcription factor MYB44 69 115 - -
Accr10g00165 332 MobiDBLite consensus disorder prediction 160 235 - -
Accr10g00165 332 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Accr10g00165 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
Accr10g00165 332 FunFam MYB transcription factor 15 66 - -
Accr10g00165 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr10g00165 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Accr10g00165 332 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Accr10g00165 332 Gene3D - 68 128 - -
Accr10g00165 332 CDD SANT 17 59 IPR001005 -
Accr10g00165 332 MobiDBLite consensus disorder prediction 199 235 - -
Accr10g00165 332 PANTHER MYB PROTEIN-RELATED 15 205 - -
Accr10g00165 332 MobiDBLite consensus disorder prediction 160 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00165 Accr-Chr10 2954943 2955941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00165 12 322 MYB Transcription Factor Family AT5G67300 55.096 2.52e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr10g00165 Myb_DNA-bind_6 1.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00165 K09422 - qsa:O6P43_024595 414.461