Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00161 ATGGAGGGGAAGATAGACATTGCAGAGAAAAAGGTGCTGGTTGATATTGTAAAATTGGCACAAAAAAGAGGAATGAAGGGTGCGCTAGGAGACTGGAAGAACTTCTTAATTAGTCATGATAAAAAGTTTGGGGCTCATTTGAGCGATCCAGCAAAGAAGTCCCATGAGACATTGGTTGCATTTCTAAAAACCTTTTCAAAGCAGGTTGATTTAAAGTTTATTGATACCATCTTGCGACACCATTCTAATAGAGACTTATTTCAGTTATTCAATGATAAGTCTCATGACACCCCTGAGCAGAGGCTTGTCCAAAAAACTTTGCAGCACCCATTGTATCCATTGGATTATGCATTTGGAGAACTTGATGAGGAGTGGATGGTTATAAACCTTAAGAAAAAAAACAGGTTGCTGAAGTTTACCAAGATGGTTGCTATTGATTGTGAAATGGTTCTCTGTGAGGATGGGACTGAAGCTGTAGTGAGTGTCTGTGTGGTTGACCGCAATTTGAAGGTCAAACTTAAAAAACTTGTACAACCAAACAAAGCAATTGCTTACTACAGATCAGAGATTACTGGGGTCTATACTCAGGATCTCGAAGGCGTTACTTGCTCATTGGCTAAGATACAAAAATCTTTGAGTAAGATGTTAATGGATGGAACAATATTAGTGGGACATAGTTTGCATAATGATCTACGCGCGCTGAAATTAGATTATGTTAGAGTGATTGACACTTCATATATCTTCCAATACTCAGATTGTAATGCTCATAGGAGACCGTCTTTGAATACTTTATGTAAGGCTGTGTTAGGTTATGAACTTCGGGAAACAGGTGCTTCACATAATTGTCTTGATGATGCAATGACAGCGATGAAGCTTGTTCTTGCTAAGATAGAGCGAGGGGTTGATAATACAATTCCCTTGCGTCAAGGGCCTGTTCTTGAAAGTGAAATGGCTAAGCTGCTTCTTCACAAGATATCATCTACGGTTAATAGTCAAGAACTGTATAAAGTTATTCCTGGGGACTACAATTTAGAACTTAGGCCCCCTAAAGGGGAAATGTATTCTGCCCTCGCCATCTTCGAGAATCCAAAAGAGGCCCATGAGGCCTTTGAAAGTCTCCAAGGTGACCAAGAAACGGATTCAGTTGGACGTCCACAGAAGCTTGTCATATTCCGTTGCAGTACAGGTGTGAAAACCAGTGTATGTGTTCGGAAAATGGCACCTGATCGCCCCAATGGCTCTAAGAGAGCTTTAGAAGTGGTCGAAACAACAGTGTTGAAGAAAGCAAAGATGGATCTTGAAATTGACAGGATGGTGTCGACGAAAGCTAAGATGGATCCTGAAATTGAAGGGAATGCGATGACCATCTCTAATAAGTGTGACACCCGCTTGAATGAGATTGAAGCTCTAAATAAACGGCTGAAAGAAGAGATCGAATCGCTGAAGCAACAGCTGAAACAAAAGGATTTGGAAATCGACATATTAAATAAAATGGTTTCCTCCTTGAACAAGAAAGTAAGGAAATGA 1527 0.4028 MEGKIDIAEKKVLVDIVKLAQKRGMKGALGDWKNFLISHDKKFGAHLSDPAKKSHETLVAFLKTFSKQVDLKFIDTILRHHSNRDLFQLFNDKSHDTPEQRLVQKTLQHPLYPLDYAFGELDEEWMVINLKKKNRLLKFTKMVAIDCEMVLCEDGTEAVVSVCVVDRNLKVKLKKLVQPNKAIAYYRSEITGVYTQDLEGVTCSLAKIQKSLSKMLMDGTILVGHSLHNDLRALKLDYVRVIDTSYIFQYSDCNAHRRPSLNTLCKAVLGYELRETGASHNCLDDAMTAMKLVLAKIERGVDNTIPLRQGPVLESEMAKLLLHKISSTVNSQELYKVIPGDYNLELRPPKGEMYSALAIFENPKEAHEAFESLQGDQETDSVGRPQKLVIFRCSTGVKTSVCVRKMAPDRPNGSKRALEVVETTVLKKAKMDLEIDRMVSTKAKMDPEIEGNAMTISNKCDTRLNEIEALNKRLKEEIESLKQQLKQKDLEIDILNKMVSSLNKKVRK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00161 508 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 306 IPR047021 GO:0004527
Accr10g00161 508 SMART exoiiiendus 141 302 IPR013520 -
Accr10g00161 508 CDD REX1_like 143 294 IPR034922 -
Accr10g00161 508 Gene3D - 138 306 IPR036397 GO:0003676
Accr10g00161 508 FunFam Small RNA degrading nuclease 3 137 310 - -
Accr10g00161 508 Coils Coil 457 505 - -
Accr10g00161 508 SUPERFAMILY Ribonuclease H-like 142 297 IPR012337 -
Accr10g00161 508 Pfam Exonuclease 143 292 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00161 Accr-Chr10 2811582 2815962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00161 141 292 C2H2 Transcription Factor Family AT2G48100 32.370 1.27e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00161 K14570 - gmx:100785565 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g00161 10 2811582 2815962 Accr10g00161 10 2811582 2815962 ECH