Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00142 ATGTGGGATCTTAACGACTCGCCTGATCAGATAAACGACAACGAATCAGAAGGATGTTCTTCGATGAATGATGATAAAGGAAAGCGGGTCGACGGATCTGTCTCGAATTCAAGCTCATCCGTGGTGGTCATGGAGGACGGATCGGCTGAAGAAGACGGCGAGGGAAGCCGTGGGATATCAGACGGGAAAGACAGCAAGATGATGGAGAAGATGAAGCGAAGCAGCAAGATATTCGGGTTTTGTGTGACCCATGAAGAGTCGTCCATGGATAGTGCTGAACCCGACCCACCTATAACCCGACAGTTTATGCCGGTGGAGGAGACTGACGACGTTGTCGCCGTCGCCGCCAGCACAGCCTTTCCTCGGTCCCGCTGGGTCGGCCTAAAATTCAGCCAATCAGAAGCAAGAAACGGCGTCGTTGTCGGCGGCGATGGTGGTGGTGGAGTTGGTGGGAAATCAGTGGAAGTAGGAGTATCGTCGTCGTCGCAGCCTATGATCAAGAAAAGCCGGCGAGGCCCACGGTCAAGAAGCTCACAGTATAGAGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCACATATGGGATTGTGGCAAACAAGTCTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCTGCCATTAAGTTCCGAGGAGTAGAAGCAGACATAAACTTCAACATAGAAGACTATGAAGAAGACTTGAAACAGATGGGGAATCTGACGAAGGAAGAGTTCGTACACGTACTTCGCCGACAAAGCACTGGGTTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTACACAAGTGTGGAAGATGGGAGGCTCGTATGGGTCAATTTCTTGGCAAAAAGTATGTTTATCTGGGTTTATTTGACACCGAGGTTGAAGCTGCCAGGGCTTATGACAAAGCAGCAATAAAGTGCAATGGGAAAGACGCCGTCACTAATTTTGATCCCAGCATCTATGAGAATGAACTTCATTCTGAATCTTCAGGTAATACTGACCACAATCTGGATTTGAGTCTGGGCAATACGAGCTCAAATCATGGTGCTAGACAATCATGGGTAAATCTTTCACCACCAGAACAATTACCTAATAGAAGTAACATGGAATCTCATCGAAGAAATGGGCACGGCGGTGAGGATGAAACGTTGTGTCTCGCAGGTCAAACTCAGCTTCAATTTTCTCAAGCCTCTGATGAAACCCACAGATATGGTCCCTACAAGACTTCTGGACAACCTCAAATTCTTCACCATTTCCCGAATTTTCACCAGCCAAATTATCGGGTTACTAGCAGCAGTAATGGAAACGCAGGTCGTTTGGGAAGTGATCTTTCATTGTCAGTGAATGATCAAGAACGATGGCAATCTGGACGTTCTCAATACTTCTCCACTGCTGCAGCATCATCAGGATTCCCACAGCAGATTACTACCTCACACTCACAAGCTTGGCTGCAGAAAAATGGGTTCCACACTTCTCTCATGAGACCCTCCTGA 1527 0.4768 MWDLNDSPDQINDNESEGCSSMNDDKGKRVDGSVSNSSSSVVVMEDGSAEEDGEGSRGISDGKDSKMMEKMKRSSKIFGFCVTHEESSMDSAEPDPPITRQFMPVEETDDVVAVAASTAFPRSRWVGLKFSQSEARNGVVVGGDGGGGVGGKSVEVGVSSSSQPMIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYENELHSESSGNTDHNLDLSLGNTSSNHGARQSWVNLSPPEQLPNRSNMESHRRNGHGGEDETLCLAGQTQLQFSQASDETHRYGPYKTSGQPQILHHFPNFHQPNYRVTSSSNGNAGRLGSDLSLSVNDQERWQSGRSQYFSTAAASSGFPQQITTSHSQAWLQKNGFHTSLMRPS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00142 508 SUPERFAMILY DNA-binding domain 178 236 IPR016177 GO:0003677
Accr10g00142 508 FunFam AP2-like ethylene-responsive transcription factor 270 330 - -
Accr10g00142 508 CDD AP2 270 330 IPR001471 GO:0003700|GO:0006355
Accr10g00142 508 ProSiteProfiles AP2/ERF domain profile. 271 328 IPR001471 GO:0003700|GO:0006355
Accr10g00142 508 FunFam AP2-like ethylene-responsive transcription factor 178 237 - -
Accr10g00142 508 PRINTS Ethylene responsive element binding protein signature 272 283 IPR001471 GO:0003700|GO:0006355
Accr10g00142 508 PRINTS Ethylene responsive element binding protein signature 310 330 IPR001471 GO:0003700|GO:0006355
Accr10g00142 508 SUPERFAMILY DNA-binding domain 270 330 IPR016177 GO:0003677
Accr10g00142 508 CDD AP2 179 236 IPR001471 GO:0003700|GO:0006355
Accr10g00142 508 Gene3D AP2/ERF domain 270 329 IPR036955 GO:0003700|GO:0006355
Accr10g00142 508 Gene3D AP2/ERF domain 178 237 IPR036955 GO:0003700|GO:0006355
Accr10g00142 508 ProSiteProfiles AP2/ERF domain profile. 179 235 IPR001471 GO:0003700|GO:0006355
Accr10g00142 508 MobiDBLite consensus disorder prediction 157 178 - -
Accr10g00142 508 MobiDBLite consensus disorder prediction 50 68 - -
Accr10g00142 508 MobiDBLite consensus disorder prediction 335 392 - -
Accr10g00142 508 MobiDBLite consensus disorder prediction 1 68 - -
Accr10g00142 508 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 416 - -
Accr10g00142 508 MobiDBLite consensus disorder prediction 335 377 - -
Accr10g00142 508 Pfam AP2 domain 179 227 IPR001471 GO:0003700|GO:0006355
Accr10g00142 508 Pfam AP2 domain 270 319 IPR001471 GO:0003700|GO:0006355
Accr10g00142 508 SMART rav1_2 271 334 IPR001471 GO:0003700|GO:0006355
Accr10g00142 508 SMART rav1_2 179 241 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00142 Accr-Chr10 2513007 2516045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00142 1 508 AP2-EREBP Transcription Factor Family AT4G36920 52.199 2.12e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Accr10g00142 AP2 8.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00142 K09284 - gmx:100786333 576.63