Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00129 ATGGGAGATTTGTACGGCTATGGAAAGAGTAACTTCATTCTTCCTCCTTCGTCGTCTTCTTCAACCTCACCCTCAGACGAATTTTCCCTTTTTCTGCATCAGATTCTCCTCCCTACTTCCTCCGCCACCGTACCGCCACCGTCTTCCCTCCTCACCCACCACATGCCTGAGAACGCTCCTAACATTTCTGAGCATGAAAATGCAAGCCTTTTGTACCCATCTTCTCTGCTTCAAGATGTAATCTCAGGTTTTGATTCTGCCTCTAAAAATCATGCCTTTCTCTCGTCTTATATCAAGGGAGGTTCTGCTGCTAATGTGTCTTCCTCATCTGTCGGAGTAAGTGGGGATGAGACTGATGAGTATGATTGTGACAGTGAGGGTGATACGGTTGAAGCAATGGTTGCGAAGTCAGTTCCTCCAAGGCGTTCGTCGAAGAGAAGCAGAGCTGCAGAAATTCATAACTTGTCTGAGAAGCGAAGGAGGAGCCGGATCAATGAAAAGCTGAAGGCTTTGCAGAATCTAATTCCAAATTCAAATAAGACTGACAAAGCTTCAATGCTTGATGAAGCTATTGAGTATCTTAAACAGCTTCAGCTTCAAGTCCAGATGCTGTCTTTGAGAAATGGATTGAATATGCTTCCTGTGGGCTTTGCCGAAGGCTTGCAGCCTCTCTACTTGTCTCAGATGAGAGTTGAATATGGAGAAGAAGAAGAAGAAAACGGGTCATGTCCTTTAAACTTCACTGCTACTAACAAACGCTCTGTGCCCTCTCCATCAAATATAATCAACTCAGAGACACCTTTTGGGTTGGATTCCCAAATCATAAGGCATCTTAGACCCTTTGAACTCACAACATCATCTTCTGAGATATGCAGGGAGAACATATTGCAGCACCAGCAATTAATTGCAGAAGATTCAAACACCAATCCTTTCGGTGATTCTCAAGCTGTGCGAGAATTTGAGTCAGGCACGTTGGCTACAGTATCACTCTCGTTTGATAATAAGCAAAACAACCGAAGTGAAGGAGAATTGAAAGCATGCATTGCAAGAGATTAG 1056 0.4394 MGDLYGYGKSNFILPPSSSSSTSPSDEFSLFLHQILLPTSSATVPPPSSLLTHHMPENAPNISEHENASLLYPSSLLQDVISGFDSASKNHAFLSSYIKGGSAANVSSSSVGVSGDETDEYDCDSEGDTVEAMVAKSVPPRRSSKRSRAAEIHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLNMLPVGFAEGLQPLYLSQMRVEYGEEEEENGSCPLNFTATNKRSVPSPSNIINSETPFGLDSQIIRHLRPFELTTSSSEICRENILQHQQLIAEDSNTNPFGDSQAVREFESGTLATVSLSFDNKQNNRSEGELKACIARD 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00129 351 Pfam Helix-loop-helix DNA-binding domain 153 198 IPR011598 GO:0046983
Accr10g00129 351 SMART finulus 154 203 IPR011598 GO:0046983
Accr10g00129 351 MobiDBLite consensus disorder prediction 144 159 - -
Accr10g00129 351 FunFam Basic helix-loop-helix transcription factor 143 206 - -
Accr10g00129 351 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 303 IPR031066 -
Accr10g00129 351 MobiDBLite consensus disorder prediction 139 159 - -
Accr10g00129 351 CDD bHLH_AtPIF_like 148 210 IPR047265 -
Accr10g00129 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 207 IPR036638 GO:0046983
Accr10g00129 351 Coils Coil 187 207 - -
Accr10g00129 351 Gene3D - 143 206 IPR036638 GO:0046983
Accr10g00129 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00129 Accr-Chr10 2411949 2415644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00129 116 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 49.756 1.20e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g00129 HLH 6.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00129 - - pcin:129295751 484.952