Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00125 ATGTCTTGGGTTCGAGGGAACTTCATTGGAAGAGGAAGCTTCTCCACCGTTCACTTAGCAGTACCAACCGCCAACAGTTTCTCTGAGATTGCTGCCCCCACCGCCGTTAAATCGTCAGAGGTTTTGTTCTGTTCTTTTCTCAAGAACGAGAAGGAGGTTCTGGATTGTCTCGGATTTTGTCCACATATTATACAGTGTTCTGGGGATGGATTTAGCTTCGAGAATGGTGGGGAGTATTATAATTTGTTTTTGGAATATGCCGCCGGTGGTAACCTTGCAGAACACATCAAGAAACAGGGCGGTCGGTTGCCGGAAGCCGATGTCCGTAGGTACACGATATCGATTCTAAAGGGTATTCAGCATATACACGCTAAAGGATTTGTTCACTGTGATATAAAGCTTCAGAACATTCTTCTGTTCGACAATGGAGATGTCAAAATTGCAGACTTCGGCCTCGCGAAGAGAACAATGGAGAGAGAAGAAAAACAGAGCAGGGAAGAGAAACAGAGTGAATGGAGGGGAACTCCTCTGTTTATGTCGCCGGAATCGGTGAGAGACAACGTGTATGACTCTCCAGCTGATATATGGTCTCTCGGCTGTGCTGTGGTGGAGATGGTGACCGGAAAACCCGCCTGGAATAGCCCAAATGGGTCGGAATTGAGTAATATTTATTCACTGTTGCTTCGAATTGGGGTCGGAGAAGAACTGCCGGAAATTCCAAAGGAGTTATCAGAAGACGGGAAGGATTTTCTGAGGAAGTGTTTGGTGAAGGATCCGGCGAAGAGATGGACGGCGGAGATGCTTTTGGAGCATCCCTTCATAAAGCACGACGGTGAAGAAAAATCGTCGCCAAGAACTCACTTCGATTTTCCAGATTGGGTTTCGAGCACGAGTAGTTTGACTCCGACTTCGCCGGAATCGGACCAGTGGCGTGAATGGAAATTTGATACGTCGTCAAGGGTTACTTGTTTTTGTTCACCGGTTGATCAGCTCCGACAAGTGGTGACGAAGGAGAGACCAAATTGGTCGGAATCGGAATCTGAAAGTTGGGTGGTTGTTAGGCAAGAATAG 1071 0.4715 MSWVRGNFIGRGSFSTVHLAVPTANSFSEIAAPTAVKSSEVLFCSFLKNEKEVLDCLGFCPHIIQCSGDGFSFENGGEYYNLFLEYAAGGNLAEHIKKQGGRLPEADVRRYTISILKGIQHIHAKGFVHCDIKLQNILLFDNGDVKIADFGLAKRTMEREEKQSREEKQSEWRGTPLFMSPESVRDNVYDSPADIWSLGCAVVEMVTGKPAWNSPNGSELSNIYSLLLRIGVGEELPEIPKELSEDGKDFLRKCLVKDPAKRWTAEMLLEHPFIKHDGEEKSSPRTHFDFPDWVSSTSSLTPTSPESDQWREWKFDTSSRVTCFCSPVDQLRQVVTKERPNWSESESESWVVVRQE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00125 356 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Accr10g00125 356 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 320 - -
Accr10g00125 356 Gene3D Transferase(Phosphotransferase) domain 1 2 352 - -
Accr10g00125 356 SMART serkin_6 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00125 356 Pfam Protein kinase domain 6 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00125 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Accr10g00125 356 CDD STKc_MAPKKK 2 274 - -
Accr10g00125 356 ProSiteProfiles Protein kinase domain profile. 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00125 356 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00125 Accr-Chr10 2363263 2364333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00125 1 354 MAP Kinase Kinase Kinase AT3G50310 51.966 3.17e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Accr10g00125 Pkinase 3.9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00125 - - pcin:129311745 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00343 9 3857398 3858459 Accr10g00125 10 2363263 2364333 CCT
Accr10g00125 10 2363263 2364333 Accr10g00125 10 2363263 2364333 ECH