Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00123 ATGGAGGTGGATGACAGAAGCATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTTCCTGAATTCTCTGAACCTTTTTACCCAGAACCTCCATTAATCTCCACTACCACCAACAACAACAGCACTATGCCCATACTCTCCAATAACATGATCAATAATAATAATCCCTTTGTGACCAACAACACTATTAATCCAATCCCACAACCACACCACCTCATTCATCAACCCAACACTATTATTAACGCTAATGCTTCTTCTTCTTCTGAGAAGAAGAATTCTATGGCGGCCATGAGAGAGATGATATTTCGAATAGCGGTGATGCAGCCCATTCACATAGACCCAGAAGCCATTAAGCCTCCAAAGAGAAGGAACGTGAAGATATCGAAGGATCCTCAAAGCGTGGCGGCGAGGCACCGGAGGGAGAGAATAAGCGAGAGAATCAGGATTTTGCAGAGATTAGTACCTGGAGGGACTAAAATGGACACGGCTTCGATGTTGGATGAAGCTATACATTATGTTAAGTTCTTGAAGAAGCAAGTTCAGACGCTGGAACAAGCTGGAGCTAGTAGAGCTACTATGGGTTTTGGGGTACCTACTAGCTTCAATAATATGAATAATAGTAGTTATTCTAATACTTTCTTGAAGGATTATAATTACCATCAACCTTCTCATCAGATGGTGGCTAGTTCTGTGCAAATGCTAAGCTGA 711 0.4191 MEVDDRSMDMMAMMMQMEKFPEFSEPFYPEPPLISTTTNNNSTMPILSNNMINNNNPFVTNNTINPIPQPHHLIHQPNTIINANASSSSEKKNSMAAMREMIFRIAVMQPIHIDPEAIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRATMGFGVPTSFNNMNNSSYSNTFLKDYNYHQPSHQMVASSVQMLS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00123 236 Gene3D - 127 194 IPR036638 GO:0046983
Accr10g00123 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Accr10g00123 236 FunFam BHLH transcription factor 131 194 - -
Accr10g00123 236 Coils Coil 167 187 - -
Accr10g00123 236 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 38 228 IPR045843 GO:0003700|GO:0006355
Accr10g00123 236 SMART finulus 134 183 IPR011598 GO:0046983
Accr10g00123 236 Pfam Helix-loop-helix DNA-binding domain 137 177 IPR011598 GO:0046983
Accr10g00123 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 187 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00123 Accr-Chr10 2329083 2329793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00123 3 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 58.883 2.03e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g00123 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00123 - - gmx:100805427 205.682