Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00118 ATGACGCAGCGATCGGCGCCGGCGCCGTTTCTGACGAAGACGTACCATTTGGTCGACGATGATTGCACCAACGACGTGATATCGTGGAGCGAAAGCGGCGAGACTTTCGTGGTGTGGAAGCAAGCGGATTTCGCCAAGGATTTGCTTCCTAATTATTTCAAACACAACAATTTCTCCAGCTTTGTTCGCCAGCTCAATACTTATGGATTCCGAAAGATAGTGCCGGACAAATGGGAATTCGCCAACGAATATTTCAAGCGAGGACGTAAGGAGCTGCTCTCCGAGATCAAACGCCGGAAGACTCTCGCGCAACCAGCCTCCGGGAAGTCCGGCAGCGGCGGAGGCGGCAACTCTGCGTCAAACTCCGGAGGAGCCGGCGACGACGTGGGATCCACCTCCACCTCGTCGGGTTCGGCAGAGGAGAAGACGGTTGCTCCGGAATATGCAGAGTTATCGGGAGAGAATGAGAAACTGAGGAAAGATAATGAAATGCTGAGCTCAGAGCTGGCGGAGGCGAAGAAGCAGTGTGAGGAGCTGGTGTGTTTTCTGAGGGAGTACCTGAAAGTGGGGCCCGATCTGATTAATCGAATAATGATGCGGCAAGGAACAAGTGGGTCCAGCCGCGAAGAAGAAGAAGAGGACGAAACAGCAAAGGCGGTAGGTGAAGGCGGAGAAAGTCTGAAACTATTTGGGGTTTGGTTGAGAGGTGAGAAAGAGACGAGAGGGCGCGAAGACCAAATGGCCTTTAGTGGGCCCCACCCATCAAAGGAGCTCAAGACTAGTGTGCACTTTGGAGCGTCTCCGGTGAATGTCATGATCAACTGA 825 0.5333 MTQRSAPAPFLTKTYHLVDDDCTNDVISWSESGETFVVWKQADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGRKELLSEIKRRKTLAQPASGKSGSGGGGNSASNSGGAGDDVGSTSTSSGSAEEKTVAPEYAELSGENEKLRKDNEMLSSELAEAKKQCEELVCFLREYLKVGPDLINRIMMRQGTSGSSREEEEEDETAKAVGEGGESLKLFGVWLRGEKETRGREDQMAFSGPHPSKELKTSVHFGASPVNVMIN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00118 274 MobiDBLite consensus disorder prediction 101 159 - -
Accr10g00118 274 MobiDBLite consensus disorder prediction 105 141 - -
Accr10g00118 274 Coils Coil 148 175 - -
Accr10g00118 274 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 207 IPR027725 -
Accr10g00118 274 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr10g00118 274 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr10g00118 274 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr10g00118 274 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Accr10g00118 274 MobiDBLite consensus disorder prediction 241 260 - -
Accr10g00118 274 Gene3D - 2 101 IPR036388 -
Accr10g00118 274 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr10g00118 274 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr10g00118 274 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr10g00118 274 MobiDBLite consensus disorder prediction 201 221 - -
Accr10g00118 274 Gene3D - 141 187 - -
Accr10g00118 274 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00118 Accr-Chr10 2246139 2248280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00118 3 246 HSF AT4G36990 56.972 2.16e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr10g00118 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00118 K09419 - twl:119999524 317.775