Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00088 ATGCCGTCAAACTCCGGCGACAATCCCCGACCATCCAAGTCTCAAGCTCCGCCGCCGGAACAAGAGCACCTCCCATGTCCTCGCTGTGACTCTACCAACACCAAGTTCTGTTACTACAACAACTATAACTTCTCCCAGCCCCGCCATTTCTGCAAGTCTTGCCGGCGCTACTGGACCCACGGCGGCACCCTCCGTGATATCCCCGTCGGCGGTGGCAGTCGCAAGAATGCGAAACGCTCTCGCACTGCCTCTACGGTTTCTTCCTGTGTTACGGCCACTTCCTCTGTTTCTACTCAGGACCATCATCCTCTTCCTACGACCCCTGTTTTTGTACCCATCTCCGCCGGCCATGGGGGCTCCTTGCCGTTTGCCGGTAACGGCGGAGTTGAGAGCGAGTTGAAATCTAGCGTGGGAATGTGTGGAAGCTTCACTTCTTTACTTAACAACACCAACCAAGGACCCGGGTTTCTGGCTCTAGGCGGGTTCGGGCTCGGACTTGGTCACGGGTTTGAAGATATGGGTTTTGGGAATGGAAGAGGTGGTGGCTGGACCTTTCCCGGGATGGTGGATGGCGGCGGCAACATCAACGGCGGAGTTGGGGCTGCTTCCGGCGTCGGGAATTCATGGCAGCTAGAAGGCGGTGAAGGCAGTGGTTTTGTTGGTGGTGGTGCAGATTGCTTCTCTTGGCCAGGACTTGCAATTTCAACACCTGGAAGTGGTCTGAAATGA 729 0.5624 MPSNSGDNPRPSKSQAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTASTVSSCVTATSSVSTQDHHPLPTTPVFVPISAGHGGSLPFAGNGGVESELKSSVGMCGSFTSLLNNTNQGPGFLALGGFGLGLGHGFEDMGFGNGRGGGWTFPGMVDGGGNINGGVGAASGVGNSWQLEGGEGSGFVGGGADCFSWPGLAISTPGSGLK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00088 242 MobiDBLite consensus disorder prediction 1 26 - -
Accr10g00088 242 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Accr10g00088 242 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Accr10g00088 242 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 150 IPR045174 GO:0003700|GO:0006355
Accr10g00088 242 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00088 Accr-Chr10 1414038 1414766 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00088 17 222 C2C2-Dof Transcription Factor Family AT5G66940 48.837 5.33e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr10g00088 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00088 - - qsa:O6P43_033783 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g00088 10 1414038 1414766 Accr10g00088 10 1414038 1414766 ECH