Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00069 ATGGGTTCTCCTCCTCGACTTGACGTGGGTTCTATATTTCAACCATTTTCTCTATTTTCCACTGGATACAGGATATGTGCTGGCTGCAAAGCTGAGATTGGCCATGGAAGGTTTTTAAGCTGTATGGGAGGAGTCTGGCATCCAGAATGTTTTCGTTGTCAAGCTTGCAATCTTCCAATCACTGATCATGAGTTTTCCATGTCTAACAATCGCCCATACCACAAATCCTGCTACAGGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCAACGAATTCAGCTGGCCTTATTGAATATAGAGCACATCCTTTCTGGCATCAAAAATACTGTCCATCACATGAGCGGGATGGCACTCCTCGCTGTTGTAGCTGTGAAAGAATGGAGTCAAGAGACAGAAAATATCTTTTGCTGGATGATGGCCGGAAGCTATGTCTAGAGTGTCTAGACTCTGCAATAATGGATACTCATGAATGCCAGCCACTTTACCTTGAAATACAAGAGTTTTATGAAGGTTTAAACATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAGACTGTCACCACTATTTTAAGGAGACCAAGGATTGGAGCAGGCTACCGAATCATGGACATGATAACAGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACAGCCATTCTTGTTTTATATGGCCTTCCAAGGTTGTTAACAGGATCAATCCTGGCTCACGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTACCCCAATCTGAGCCCCGAGGTTGAAGAAGGGATTTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAAATATATGCTGGGTCTGGGGGCGATGGTGCATCTTCCTCCTCGTCTTCATCATCATCCTCACCTTCCTCCTCTTCCTCCACGTCATCAAAGAAGGGGAAAAGGTCCGACTTTGAGAAGAAACTGGGTGAGTTTTTTAAACACCAGATTGAGTCTGATACCTCATCAGCTTATGGAGATGGATTCAGATTAGGTAACAAAGCAGTGAGCAAGTATGGGCTCAGAAGGACCCTTGACCATATCCAACTGACAGGAAGTTTTCCCTTGTGA 1191 0.4433 MGSPPRLDVGSIFQPFSLFSTGYRICAGCKAEIGHGRFLSCMGGVWHPECFRCQACNLPITDHEFSMSNNRPYHKSCYREQHHPKCDVCKNFIPTNSAGLIEYRAHPFWHQKYCPSHERDGTPRCCSCERMESRDRKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRIMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYAGSGGDGASSSSSSSSSSPSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNKAVSKYGLRRTLDHIQLTGSFPL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00069 396 MobiDBLite consensus disorder prediction 316 338 - -
Accr10g00069 396 FunFam Protein DA1-related 1 20 79 - -
Accr10g00069 396 Gene3D Cysteine Rich Protein 17 84 - -
Accr10g00069 396 ProSiteProfiles LIM domain profile. 24 84 IPR001781 -
Accr10g00069 396 PANTHER PROTEIN DA1-RELATED 2 10 395 IPR045218 -
Accr10g00069 396 Pfam Protein DA1 175 390 IPR022087 -
Accr10g00069 396 CDD LIM_DA1 26 78 - -
Accr10g00069 396 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 51 - -
Accr10g00069 396 MobiDBLite consensus disorder prediction 316 342 - -
Accr10g00069 396 Pfam LIM domain 26 81 IPR001781 -
Accr10g00069 396 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 52 107 - -
Accr10g00069 396 SMART lim_4 25 77 IPR001781 -
Accr10g00069 396 ProSitePatterns LIM zinc-binding domain signature. 26 60 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00069 Accr-Chr10 1133196 1136425 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr10g00069 DA1-like 3.7e-107 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00069 - - qsa:O6P43_024715 729.554