Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00068 ATGGGTTGGTTTACAAAGTTGATTAAGGGCTCCAACCATAGGGGACAGTATCAGGGGAAATATGGAAATGACAGCATTTGGGATGACCATCGTAATTCAGTGGATGATTTGACTGATTTTGAGAAAGAAGAAATTGACCGTGCAATTGCAATCTCTCTATCAGAGGAGGATCAGAAAGGGAAAAAAGTTATTGAGTATCACTCACAGTCAGAAGATGAAGAACTTTGTCCTATTGATGAGGAGGAAGATGAACATCTCGGTAAAGTTCAAGAAGAGGAAGCTGATAGTCTTGCTGACATTCAAAAGGAGGAAGATGAACATCATGCAAAACTTCAACTTGAGGAAGATGAACTACTTGCGAGAGCAATTCAAGAAAGTTTAAGCATGGGTTCTCCTCCTCGACTTGACGTGGGTTCTATATTTCAACCATTTTCTCTATTTTCCACTGGATACAGGATATGTGCTGGCTGCAAAGCTGAGATTGGCCATGGAAGGTTTTTAAGCTGTATGGGAGGAGTCTGGCATCCAGAATGTTTTCGTTGTCAAGCTTGCAATCTTCCAATCACTGATCATGAGTTTTCCATGTCTAACAATCGCCCATACCACAAATCCTGCTACAGGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCAACGAATTCAGCTGGCCTTATTGAATATAGAGCACATCCTTTCTGGCATCAAAAATACTGTCCATCACATGAGCGGGATGGCACTCCTCGCTGTTGTAGCTGTGAAAGAATGGAGTCAAGAGACAGAAAATATCTTTTGCTGGATGATGGCCGGAAGCTATGTCTAGAGTGTCTAGACTCTGCAATAATGGATACTCATGAATGCCAGCCACTTTACCTTGAAATACAAGAGTTTTATGAAGGTTTAAACATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAGACTGTCACCACTATTTTAAGGAGACCAAGGATTGGAGCAGGCTACCGAATCATGGACATGATAACAGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACAGCCATTCTTGTTTTATATGGCCTTCCAAGGTTGTTAACAGGATCAATCCTGGCTCACGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTACCCCAATCTGAGCCCCGAGGTTGAAGAAGGGATTTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAAATATATGCTGGGTCTGGGGGCGATGGTGCATCTTCCTCCTCGTCTTCATCATCATCCTCACCTTCCTCCTCTTCCTCCACGTCATCAAAGAAGGGGAAAAGGTCCGACTTTGAGAAGAAACTGGGTGAGTTTTTTAAACACCAGATTGAGTCTGATACCTCATCAGCTTATGGAGATGGATTCAGATTAGGTAACAAAGCAGTGAGCAAGTATGGGCTCAGAAGGACCCTTGACCATATCCAACTGACAGGAAGTTTTCCCTTGTGA 1575 0.4317 MGWFTKLIKGSNHRGQYQGKYGNDSIWDDHRNSVDDLTDFEKEEIDRAIAISLSEEDQKGKKVIEYHSQSEDEELCPIDEEEDEHLGKVQEEEADSLADIQKEEDEHHAKLQLEEDELLARAIQESLSMGSPPRLDVGSIFQPFSLFSTGYRICAGCKAEIGHGRFLSCMGGVWHPECFRCQACNLPITDHEFSMSNNRPYHKSCYREQHHPKCDVCKNFIPTNSAGLIEYRAHPFWHQKYCPSHERDGTPRCCSCERMESRDRKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRIMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYAGSGGDGASSSSSSSSSSPSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNKAVSKYGLRRTLDHIQLTGSFPL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00068 524 Coils Coil 97 117 - -
Accr10g00068 524 CDD LIM 181 256 - -
Accr10g00068 524 SMART lim_4 153 205 IPR001781 -
Accr10g00068 524 CDD LIM_DA1 154 206 - -
Accr10g00068 524 ProSitePatterns LIM zinc-binding domain signature. 154 188 IPR001781 -
Accr10g00068 524 MobiDBLite consensus disorder prediction 444 466 - -
Accr10g00068 524 Pfam LIM domain 154 209 IPR001781 -
Accr10g00068 524 SMART uim 40 59 IPR003903 -
Accr10g00068 524 SMART uim 114 133 IPR003903 -
Accr10g00068 524 MobiDBLite consensus disorder prediction 444 470 - -
Accr10g00068 524 Pfam Protein DA1 303 518 IPR022087 -
Accr10g00068 524 ProSiteProfiles LIM domain profile. 152 212 IPR001781 -
Accr10g00068 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 180 235 - -
Accr10g00068 524 FunFam Protein DA1-related 1 148 207 - -
Accr10g00068 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 179 - -
Accr10g00068 524 PANTHER PROTEIN DA1-RELATED 2 3 523 IPR045218 -
Accr10g00068 524 Gene3D Cysteine Rich Protein 145 211 - -
Accr10g00068 524 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 114 133 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00068 Accr-Chr10 1133196 1137439 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr10g00068 DA1-like 7.3e-107 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00068 - - gmx:100817969 879.011