Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00034 ATGTCTGGTTGCGGCAGCTACGAGGGGCACGTGATGGGAGCGTGCGCATGTGGCATGTATCACAGCCAAACCAATTCCTTCCCTATGCACTACACTACCAACCAAAATTCCTACGCTTATGACTACGACGATTCCGACATGTATTCTTCCTTCACGCCCTCCTCCTCCTCCGTCGACTGCACGCTGTCTCTCGGCACACCCTCCACTCGTTTGACTCATCACGACGAAGACAGGCGAGGCGGCGCCAGCCGCAGCAATGAACGACGGCGCTCTGTCTCCAACATGTGCTGGGACTTATTACAGTCCAATCAATCCCACAGTAGCAATAATAAGTCCGGCAAAGGCAGCTCCTCCTCCACCTCCAATGATCCTCTTCTAGCTCGTCGTTGTGCCAATTGTGACACCACTTCCACGCCCCTCTGGAGAAATGGCCCCAGAGGTCCCAAGTCACTGTGCAATGCCTGTGGGATCAGATACAAGAAGGAAGAGAGGAGAGCCGCGGCCGCCGCCACGGCTTCTGCGTCGTCGGGCGGAGTCATGGAGTCTCAGGCGATGTACGGCCAACAAGACAACTACTGGTACGCACAGTCACCGTACTCACAGGGCCAGATAATGCCGTGTTACTCACCGGGAATGGTGGAAGACGGTAATGGAGACTCCGACAACGGCATGGCAGCTTTCCTCTCGTGGAGGCTCAACGTAACGGACAGACCAGGCCTCGTCCATGACTTTACAAGATGA 741 0.5574 MSGCGSYEGHVMGACACGMYHSQTNSFPMHYTTNQNSYAYDYDDSDMYSSFTPSSSSVDCTLSLGTPSTRLTHHDEDRRGGASRSNERRRSVSNMCWDLLQSNQSHSSNNKSGKGSSSSTSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRAAAAATASASSGGVMESQAMYGQQDNYWYAQSPYSQGQIMPCYSPGMVEDGNGDSDNGMAAFLSWRLNVTDRPGLVHDFTR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00034 246 MobiDBLite consensus disorder prediction 66 90 - -
Accr10g00034 246 MobiDBLite consensus disorder prediction 103 123 - -
Accr10g00034 246 SMART GATA_3 124 176 IPR000679 GO:0006355|GO:0043565
Accr10g00034 246 Pfam GATA zinc finger 130 164 IPR000679 GO:0006355|GO:0043565
Accr10g00034 246 ProSitePatterns GATA-type zinc finger domain. 130 155 IPR000679 GO:0006355|GO:0043565
Accr10g00034 246 MobiDBLite consensus disorder prediction 70 86 - -
Accr10g00034 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 164 - -
Accr10g00034 246 ProSiteProfiles GATA-type zinc finger domain profile. 124 160 IPR000679 GO:0006355|GO:0043565
Accr10g00034 246 CDD ZnF_GATA 129 161 IPR000679 GO:0006355|GO:0043565
Accr10g00034 246 Gene3D - 126 185 IPR013088 GO:0006355|GO:0008270
Accr10g00034 246 PANTHER GATA TRANSCRIPTION FACTOR 18 12 246 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00034 Accr-Chr10 418916 419788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00034 4 246 C2C2-Gata Transcription Factor Family AT3G50870 40.418 3.88e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr10g00034 GATA 6.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00034 - - pcin:129312177 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00209 9 2262736 2263573 Accr10g00034 10 418916 419788 CCT
Accr10g00034 10 418916 419788 Accr10g00034 10 418916 419788 ECH