Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00032 ATGACAACAACCACTCAGGAGAATTATGATGAAGACGATGATGATCACCCCAAAAGAGATTCTTCTTCTTCAGAACAAAACCATCATCTTCATCTTCCTCCTCCGTCGAATCAAATACAAAGTGATCCATATGCAAGCTTAACGATCGTGAAGTACAGAGAATGTATGAAGAATCACGCAGCGAGCATGGGGAGTCATATTGTGGATGGATGTGGAGAGTTCATGCCAAACGGAGAAGAAGACACCCCGGAATCTTTAAGATGTGCTGCTTGTGGATGCCACCGGAATTTTCACCGGAAAGAAACACAAGGTAAGCCAGAACAACAACATATTATTCCTGATTATTATTACACCTATTATTATTCCAACAAAAGCAACAATCAACAACCACATAGAATTGCTCCTCCTCCTATAATCGTCCCCTCTTCTCTTCATCATCAACATAATAAACTGATTAATCAACCAATGATGGTGGCCTTCGGAGGAGGAGTGCCGGTGGATTCCTCCGGCGAAGGGCGGCAGCAGCCGGCATCAATGTCGAAGACGACGAAGAAGAGGTTTAGGACAAAGTTTACACAAGAACAGAAGAGGAGGATGATGGAATATGCAGAGAAGATTGGGTGGAAGATCCAGAAGAATGAGGAACAACAAGTACGGCAATTCTGTTCTCAAGTGGAAGTGGAGATGCAGGTTTTCAAGATTTGGATGCACAACAACAAGCAAAGGACCAAGCTGCACCAAGTGTAA 747 0.4351 MTTTTQENYDEDDDDHPKRDSSSSEQNHHLHLPPPSNQIQSDPYASLTIVKYRECMKNHAASMGSHIVDGCGEFMPNGEEDTPESLRCAACGCHRNFHRKETQGKPEQQHIIPDYYYTYYYSNKSNNQQPHRIAPPPIIVPSSLHHQHNKLINQPMMVAFGGGVPVDSSGEGRQQPASMSKTTKKRFRTKFTQEQKRRMMEYAEKIGWKIQKNEEQQVRQFCSQVEVEMQVFKIWMHNNKQRTKLHQV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00032 248 MobiDBLite consensus disorder prediction 27 42 - -
Accr10g00032 248 MobiDBLite consensus disorder prediction 1 42 - -
Accr10g00032 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 52 101 IPR006456 -
Accr10g00032 248 NCBIfam homeobox domain, ZF-HD class 184 241 IPR006455 -
Accr10g00032 248 Gene3D - 168 244 - -
Accr10g00032 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 241 - -
Accr10g00032 248 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 51 101 IPR006456 -
Accr10g00032 248 MobiDBLite consensus disorder prediction 11 26 - -
Accr10g00032 248 FunFam Zinc-finger homeodomain protein 2 171 245 - -
Accr10g00032 248 SUPERFAMILY Homeodomain-like 171 244 IPR009057 -
Accr10g00032 248 Pfam ZF-HD protein dimerisation region 50 102 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00032 Accr-Chr10 387107 387853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00032 50 248 ZF-HD Transcription Factor Family AT4G24660 45.226 8.29e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Accr10g00032 ZF-HD_dimer 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00032 - - pcin:129311881 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00205 9 2212599 2213531 Accr10g00032 10 387107 387853 CCT
Accr10g00032 10 387107 387853 Accr10g00032 10 387107 387853 ECH
Accr10g00032 10 387107 387853 Accr9g00205 9 2212599 2213531 ECH