Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00031 ATGACAACAACCACTCAGGAGAATTATGATGAAGACGATGATGATCACCCCAAAAGAGATTCTTCTTCTTCAGAACAAAACCATCATCTTCATCTTCCTCCTCCGTCGAATCAAATACAAAGTGATCCATATGCAAGCTTAACGATCGTGAAGTACAGAGAATGTATGAAGAATCACGCAGCGAGCATGGGGAGTCATATTGTGGATGGATGTGGAGAGTTCATGCCAAACGGAGAAGAAGACACCCCGGAATCTTTAAGATGTGCTGCTTGTGGATGCCACCGGAATTTTCACCGGAAAGAAACACAAGGAGGAGTGCCGGTGGATTCCTCCGGCGAAGGGCGGCAGCAGCCGGCATCAATGTCGAAGACGACGAAGAAGAGGTTTAGGACAAAGTTTACACAAGAACAGAAGAGGAGGATGATGGAATATGCAGAGAAGATTGGGTGGAAGATCCAGAAGAATGAGGAACAACAAGTACGGCAATTCTGTTCTCAAGTGGAAGTGGAGATGCAGGTTTTCAAGATTTGGATGCACAACAACAAGCAAAGGACCAAGCTGCACCAAGTGTAA 573 0.4572 MTTTTQENYDEDDDDHPKRDSSSSEQNHHLHLPPPSNQIQSDPYASLTIVKYRECMKNHAASMGSHIVDGCGEFMPNGEEDTPESLRCAACGCHRNFHRKETQGGVPVDSSGEGRQQPASMSKTTKKRFRTKFTQEQKRRMMEYAEKIGWKIQKNEEQQVRQFCSQVEVEMQVFKIWMHNNKQRTKLHQV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00031 190 MobiDBLite consensus disorder prediction 27 42 - -
Accr10g00031 190 MobiDBLite consensus disorder prediction 1 42 - -
Accr10g00031 190 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 52 101 IPR006456 -
Accr10g00031 190 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 51 101 IPR006456 -
Accr10g00031 190 NCBIfam homeobox domain, ZF-HD class 126 183 IPR006455 -
Accr10g00031 190 MobiDBLite consensus disorder prediction 100 128 - -
Accr10g00031 190 FunFam Zinc-finger homeodomain protein 2 113 187 - -
Accr10g00031 190 MobiDBLite consensus disorder prediction 11 26 - -
Accr10g00031 190 SUPERFAMILY Homeodomain-like 113 186 IPR009057 -
Accr10g00031 190 Gene3D - 110 186 - -
Accr10g00031 190 MobiDBLite consensus disorder prediction 109 124 - -
Accr10g00031 190 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 183 - -
Accr10g00031 190 Pfam ZF-HD protein dimerisation region 50 102 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00031 Accr-Chr10 387107 387853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00031 50 190 ZF-HD Transcription Factor Family AT4G24660 47.727 2.89e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Accr10g00031 ZF-HD_dimer 8.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00031 - - pcin:129311881 262.692