Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00029 ATGGCATCGTCGTCTTGGACTCCGAGGCAAAACAAACTGTTTGAACGAGCTCTGGCTTTATATGATAGGGAAACACCTGACAGGTGGCAGAATGTTGCCAGAGAGGTTGGAAAATCAGTGGAGGAGGTCAAAAGGCACTATGAGATCCTCAAAGAAGACGTCAAACGCATAGAGCATGGTCAAGTCCCCTACCCCTACTGCAGTACTAATCGCACATAA 219 0.4749 MASSSWTPRQNKLFERALALYDRETPDRWQNVAREVGKSVEEVKRHYEILKEDVKRIEHGQVPYPYCSTNRT 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00029 72 FunFam Transcription factor SRM1 1 64 - -
Accr10g00029 72 SMART sant 2 53 IPR001005 -
Accr10g00029 72 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 69 IPR044636 GO:0003700
Accr10g00029 72 SUPERFAMILY Homeodomain-like 4 58 IPR009057 -
Accr10g00029 72 CDD SANT 5 51 IPR001005 -
Accr10g00029 72 Gene3D - 1 64 - -
Accr10g00029 72 ProSiteProfiles SANT domain profile. 1 55 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00029 Accr-Chr10 380313 380531 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Accr10g00029 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00029 - - ccaj:114916639 123.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g01730 1 47333983 47334542 Accr10g00029 10 380313 380531 ECH
Accr10g00029 10 380313 380531 Accr10g00029 10 380313 380531 ECH