Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00026 ATGGGAACTGATTGTGGTGAAGTAGTAGAGCCAGTACCAAATATCCGCTCCTTTAAGGTCCATCATAAAATGTGCACAGAGCTGATGAAATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGAAGCAGCACGTCCTCGATGCTCAGCAGGAATACAATCTCTGTGCTTGCTAAGCAATGCAATTGATAAAGCCAAACTTCTTCTGCAGCATTGCTGCGAGTCTAGCAAACTCTACCTGGCTGTGACGGGAGATACGGTACTCTCAAGATTCCAAAAAGCAAGAAAGTCATTGGAGCAAAGCTTAAGCCAAGTTCAGAGCGTAGTTCCAGTTATGCTGGCTGCAGAGATTTCTCAAATAATTGATAATCTTGCATGCATTACTATTGTATTGGATTCAACTGAAGAAGAGACCGGGAGGGTTATAAAGGAATTACTTCAGCAAGGTGCTTCAACTTCAGACTCTATTGAAATTTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCAAGACTTAACATCAGATCCCCAAAGGCCATCTTATTAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAGTTGGACCTAACGACCAGACAAAAAAGATGATCTTGAGATATCTCTTGCATCTATTGAAGAAGTATGGTAACTATATCACAGGAGAACAGATAGAAGCGGTCTATCCGTATAGTGATGGACCAATTGTACCTGAGAACTGCAGTCTTCACTCTCAACATATCCATCATGTTGAACCAGAAAGATGCTTTAATTATGATCAGTTTGAAACTCACGACAGTGAGATGGGTAGAGCAGAACCGCAAGAGGAATACAAATGTCCAATATCTTCAAGATTAATGTATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATTCAAAAGTGGTTTGAAGAGGGCAATGATACATGTCCAAAAACCGGGAAGAAACTGGCCCATATGTCATTGACTCCAAACACTGTTATGAAGGACTTAATATCCAAGTGGTGCAGAAATAATGGAGTGACACTTGCTGAACCACAAAAGCTAGCAAAAGAATTTCACTCATGGGAGGTTTCTTCAACTTCCATTAGGAGCTTTGGCAGTTCTATGAATGATCTGCACTTGCCTGTAGATCTTAGCAGCATGTCACTTGGATCGTTAGATTATAGTCAAGGCTCTGATTCCTCACATGCTAGGAACACTAATGACTTCAATTTGATGCCAAAGAAGGCCAATGACAATTCTTGGAGTCATCAAATTTACGTGCATGTGCATGACACCGATCTGATAACTTTATCTAAATTCCCCTACCTTGAGTGGGATTCTCAATGCCAGGCCATTAAAGATCTGAAAGATCGTTTGAAATGCAATTGCCAAGCTTCTTGTTCTCTGCCATCCGAAAAGTTTGTTGAACTCCTCAACAGATTTTTGAGCTTTGCATATGAACATCAAGATGTCAAAGCTCTGAGAACAGGAACTCAATTGTTAATGGAATTTGTGAATAACTGCGGAAAGGATCTGTCCTATTTAAGAGAAGACACATTTGGCATGTTGGGAAGTTTCCTTGATTTGGAAGTGATGGTTGAAGCTCTTTCTATAATGGAAAAACTATCTGCAAATTATCACAATAAAGCTACAATTGCAACATCCAGTGTGCTCACTTCCATCTTAAAGATCCTGGACTCTGACAGCAGAGAGTTCCAAGAACAAGCTATCAGAATATTGTATAATCTGTCTTTCAACAGTGAGAATTGCTCCCATATGGCATCTCTTGGGTGCATCCCAAAATTGCTGCCCTATTTTGAGGACCAGACCCTTTTAAGATACTGTATATGTATGTTGAAAAACCTTGGTGATATTGAGGTGGGCAGGGTTTCTATTGTGAGAACTAATGGATGCATAGCTTCAGTTGCTGAGATACTTGATACTGGCAGTATCGAGGAACAGGAGCATGCACTCTCTGTTTTACTCTCTTTATGCTCTCAGCGTGAGGATTATTGTCAGTTGGTCATGTATGAGGGTGTTATCCCTTCTCTCGTCACTATCTCCATCAATGGAAGTGACAATGGAAAGGTGAGTGCCGTCGAATTGCTTCGTCTTCTGGGGGATGTTCAATATGAAGAAGAGTCCGTGAAGCCAAGATGTGAGACTCAAGATTCTAATGATCATTCCCAAGAAAAGAAATCGTCGAAGACCTCTGGTTTTCTGAAGAAACTATCACCATTCTCAAAAAGCAAGAGGTGA 2256 0.4038 MGTDCGEVVEPVPNIRSFKVHHKMCTELMKLVDRISRIFPDIEAARPRCSAGIQSLCLLSNAIDKAKLLLQHCCESSKLYLAVTGDTVLSRFQKARKSLEQSLSQVQSVVPVMLAAEISQIIDNLACITIVLDSTEEETGRVIKELLQQGASTSDSIEISEIKALQFAAARLNIRSPKAILLEKRSIKKLLDKVGPNDQTKKMILRYLLHLLKKYGNYITGEQIEAVYPYSDGPIVPENCSLHSQHIHHVEPERCFNYDQFETHDSEMGRAEPQEEYKCPISSRLMYDPVVIASGATYERMWIQKWFEEGNDTCPKTGKKLAHMSLTPNTVMKDLISKWCRNNGVTLAEPQKLAKEFHSWEVSSTSIRSFGSSMNDLHLPVDLSSMSLGSLDYSQGSDSSHARNTNDFNLMPKKANDNSWSHQIYVHVHDTDLITLSKFPYLEWDSQCQAIKDLKDRLKCNCQASCSLPSEKFVELLNRFLSFAYEHQDVKALRTGTQLLMEFVNNCGKDLSYLREDTFGMLGSFLDLEVMVEALSIMEKLSANYHNKATIATSSVLTSILKILDSDSREFQEQAIRILYNLSFNSENCSHMASLGCIPKLLPYFEDQTLLRYCICMLKNLGDIEVGRVSIVRTNGCIASVAEILDTGSIEEQEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTISINGSDNGKVSAVELLRLLGDVQYEEESVKPRCETQDSNDHSQEKKSSKTSGFLKKLSPFSKSKR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00026 751 Pfam Kinesin-associated protein (KAP) 490 652 - -
Accr10g00026 751 SMART arm_5 625 665 IPR000225 GO:0005515
Accr10g00026 751 SMART arm_5 667 707 IPR000225 GO:0005515
Accr10g00026 751 SMART arm_5 585 623 IPR000225 GO:0005515
Accr10g00026 751 SMART arm_5 544 584 IPR000225 GO:0005515
Accr10g00026 751 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Accr10g00026 751 SUPERFAMILY ARM repeat 486 705 IPR016024 -
Accr10g00026 751 Gene3D - 445 746 IPR011989 -
Accr10g00026 751 MobiDBLite consensus disorder prediction 713 751 - -
Accr10g00026 751 Pfam U-box domain 275 343 IPR003613 GO:0004842|GO:0016567
Accr10g00026 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 355 IPR013083 -
Accr10g00026 751 SUPERFAMILY RING/U-box 263 347 - -
Accr10g00026 751 CDD RING-Ubox_PUB 275 326 IPR045210 -
Accr10g00026 751 MobiDBLite consensus disorder prediction 713 737 - -
Accr10g00026 751 PANTHER U BOX DOMAIN-CONTAINING 23 714 - -
Accr10g00026 751 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00026 Accr-Chr10 354787 357939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00026 16 720 U-box Gene Family AT4G36550 36.893 1.01e-119 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00026 - - gmx:100791627 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00202 9 2167782 2170894 Accr10g00026 10 354787 357939 CCT
Accr10g00026 10 354787 357939 Accr10g00026 10 354787 357939 ECH
Accr10g00026 10 354787 357939 Accr9g00202 9 2167782 2170894 ECH