Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1908 ATGTATTTGCAATTCTACCTATTTGTGCTTACTGGTAAGACTGTACCTATCATTCTATATGCTGTATTTAGAAGGCATTTGCGCCCAGAAAAGGATTATCTATCATTTTCACTTGTTTACAAAAACGGAGAACGGACACTTGATCTGATTTGCAAGGACAAAGCTGAGCTGGAGATATGGTTTGGTGGCCTAAAGGCATTAATTTCTCCTGGACAACACGCCCTACGTTCCAAAAGTAACTTATATGATGTACAAGTTGGTGTTGACTTCTTCCCAATTAGTCGTCCTTTTGGCGCAACATTAGAGTTTGCTTCTAACATTGGACGTGGCAGGGATTCCATAGATTCTTCATTGAATTGGGCAACCTCAGATGTTGCATCAGGCGGTCCGAATATGCAACCAAGGACAAGTGCTTCAGATGGCTTCCGTGTAAGTGTGTCAAGCACACCTAGTTGTTCAAGCATAGGATCGGGGCCAGATGACATAGAGTCACTAGGTGATGTGTATATATGGGGAGAGGTTTGGAGTGATGGGGCTTCACCTGATTGTTGGATCACGGATGTCCTAGTTCCTAAGCCATTAGAATCAAATGTTGTTCTTGATGTTCAACAAATTGCATCTGGTATGCATCACATTGCTCTAGTTACGAGGCAGGGAGAGGTGTTTTCTTGGGGTGAGGAATCTGGGGGAAGACTTGGTCATGGGATTGATAAAGATTTCTGTCACCCACATTTGATTGAGTTTCTCTCTGTTCAAAATGTTGAGTTTGTTGCATGTGGTGAGTATCATACGTGTGCTCTTTCTACATGGGGTGATTTATTCACTTGGGGAGATGGTGCTCATAACGCTGGCCTTCTTGGTCATGGCAGTGATGTTAGTCATTGGATTCCAAAGAGAGTCACCGGCCCTTTAGAAGGTCTACAAGTTGTATCAATTGCATGTGGTACATGGCATTCTGCACTTGCAACCTCTAATGGAAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTAGGCCATGGAGATCGGAGCAGTGTGTCATATCCAAGGGAGGTACAATCATTGAGCGGACTCAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTATAGAGGTTATGGGTCATCAAGGTACTAATATTTCATCCCGAAAGCTTTTTACTTGGGGTGACGGTGACAAGTATCGATTGGGTCATGGAAACAAGGAAACCTACCTTCAACCCACTTGTGTCTCTGCGCTAATTGATTATAATTTCCTCCAGATAGCATGTGGCCACACTATGACCGTTGCCTTAGATACATCAGGTTTTGTATTTACCATGGGCGGCACTGCATATGGTCAGCTAGGAAATGCTTTGTCTGATGGAAAAACACCTAAAAAGGTTCAAGATAAGTTGGTTGGTGAATATGTTGAGGAGATATCATGTGGAGCAAATCATGTTGCTGTCTTAACATCAAGAAGCGAATTATATACGTGGGGCAAGGGAGCCAATGGAAGATTGGGGCATGGAGACACCCAAGACCGGAAATCTCCAACACTGGTTGAAAGCTTAAAAGATAGGCATATCAGAAATGTCTCATGTGGCTCAAATTTTACATCTTGCATATGCATCCATAAATGGATCTCTGGACCTGATCAATCTGTTTGCTGTGGTTGTCGCCAAGCATTTGGCTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGCTTGGTGCATTGCCATGCTTGTAGCTCCAAGAAGGCTTTAAGAGCCGCATTGGCTCCAACGCCAGGAAAACCACATCGTGTGTGTGATGCTTGTTATAATAAGCTTAAAGCTGCTGAAACTGCTAGCGCTTCTTTTACTTTTAGTAGGAAACCTACTCCTCCTTGTCAATCCATAGATGGCAGGGAAAGATTAGATCGTGGAGAAGCAAGGTCTTCAAGAATTCTTGTGTCTTCCATTACTGAGCCAGCAAAATTCCTTGAGATTTGGGGAAATAAGTCAGAATCTAAACATGATTTTCCTTCCCTTTCCCGAAGTCCTCAATCAAGTTCACAATTCAAGCATGCTGCATTTCCAAGTTCATTGAAGCCCATTCATAATGCTTTCAGGCCTTCAAGTCCACCACCAACTCCACCAGCCAATTCAATACCTGCATCTCCATATACAAGAAGACCGAGTCCTCCCCGTTCTGCCAGCCCTGGATTTTCTAGAAGCATGATTGAAAATTTGAGCAAGTCGAATGAGCTTATGAACCAAGAACTCTCGAAATTACAAAATCAAATTATAAGTTTGAAACAGAAGAACGATATGCAAGATATGGAGATTCAGAAGTTGAAGAAAAATGTCCAGGAAGCTACCTTGTTGACTGGAGAGGAATCCTCTAAGCATAGGCTAGCTAGGAAATTTATTAAGAGCGTGACAGATCAGTTGAAAGATGTGACAGAGAATTTGCCACCAGACAATCCAAACAGTGAGACCTTGAGAAATATCCATGCTCAAGCTGAAGATTTCTTGAGAGAAAATATAGAACCTGAAGCATCATCTTCCATACTTTCAAACATAGAGCCTAGTCAAGAAATTGGACTTGATACACCAGCTTCAGATATTGATGGTTCTAAATTGCAAGAACAGAAACATGAAGAAACTATTAATCCTGCTGGAGTCGAACCATCTCAACGTTCAGGAAATTCTCTTCAAGAAAGAAGTAGAACATCTTTATCTATTATAGAAGCAGAAACTCCACCGCAAAGCTTAGAGAATGGTTCACAATCACCAGACTCTATGCAACCAGGTAGAGAAACAGAAGCACAGGTCATTGAACCATTTGAATCTGGTGTTTATGTGACGCTAGTAGTAAGGCCAAATGGATCAAAAGTTTTCAAACGAGTTAGATTCAGTAAAAAAAGGTTCGATGCACAGCAAGCAGAAGAATGGTGGAATATGAATAAAGATAGGGTGTTTAAAACGTATAGTTCACCAACAACAAATCCTGCAGCTACTAGGTCATCAGCTACGTCTAACACTAAACCCTTAGCTGAAGACAACACTTAA 3051 0.4166 MYLQFYLFVLTGKTVPIILYAVFRRHLRPEKDYLSFSLVYKNGERTLDLICKDKAELEIWFGGLKALISPGQHALRSKSNLYDVQVGVDFFPISRPFGATLEFASNIGRGRDSIDSSLNWATSDVASGGPNMQPRTSASDGFRVSVSSTPSCSSIGSGPDDIESLGDVYIWGEVWSDGASPDCWITDVLVPKPLESNVVLDVQQIASGMHHIALVTRQGEVFSWGEESGGRLGHGIDKDFCHPHLIEFLSVQNVEFVACGEYHTCALSTWGDLFTWGDGAHNAGLLGHGSDVSHWIPKRVTGPLEGLQVVSIACGTWHSALATSNGKLFTFGDGTFGVLGHGDRSSVSYPREVQSLSGLKTIKVACGVWHTAAIIEVMGHQGTNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFLQIACGHTMTVALDTSGFVFTMGGTAYGQLGNALSDGKTPKKVQDKLVGEYVEEISCGANHVAVLTSRSELYTWGKGANGRLGHGDTQDRKSPTLVESLKDRHIRNVSCGSNFTSCICIHKWISGPDQSVCCGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYNKLKAAETASASFTFSRKPTPPCQSIDGRERLDRGEARSSRILVSSITEPAKFLEIWGNKSESKHDFPSLSRSPQSSSQFKHAAFPSSLKPIHNAFRPSSPPPTPPANSIPASPYTRRPSPPRSASPGFSRSMIENLSKSNELMNQELSKLQNQIISLKQKNDMQDMEIQKLKKNVQEATLLTGEESSKHRLARKFIKSVTDQLKDVTENLPPDNPNSETLRNIHAQAEDFLRENIEPEASSSILSNIEPSQEIGLDTPASDIDGSKLQEQKHEETINPAGVEPSQRSGNSLQERSRTSLSIIEAETPPQSLENGSQSPDSMQPGRETEAQVIEPFESGVYVTLVVRPNGSKVFKRVRFSKKRFDAQQAEEWWNMNKDRVFKTYSSPTTNPAATRSSATSNTKPLAEDNT 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1908 1016 MobiDBLite consensus disorder prediction 887 931 - -
Acco13g1908 1016 SUPERFAMILY PH domain-like 8 68 - -
Acco13g1908 1016 Gene3D - 138 383 IPR009091 -
Acco13g1908 1016 FunFam PH, RCC1 and FYVE domains-containing protein 1 137 379 - -
Acco13g1908 1016 SUPERFAMILY FYVE/PHD zinc finger 544 615 IPR011011 -
Acco13g1908 1016 MobiDBLite consensus disorder prediction 849 934 - -
Acco13g1908 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Acco13g1908 1016 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 548 610 IPR017455 -
Acco13g1908 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 440 488 IPR000408 -
Acco13g1908 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 271 321 IPR000408 -
Acco13g1908 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 219 267 IPR000408 -
Acco13g1908 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 390 436 IPR000408 -
Acco13g1908 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 493 540 IPR000408 -
Acco13g1908 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 325 374 IPR000408 -
Acco13g1908 1016 Gene3D - 385 545 IPR009091 -
Acco13g1908 1016 MobiDBLite consensus disorder prediction 620 643 - -
Acco13g1908 1016 MobiDBLite consensus disorder prediction 696 737 - -
Acco13g1908 1016 MobiDBLite consensus disorder prediction 702 727 - -
Acco13g1908 1016 ProSiteProfiles PH domain profile. 1 69 IPR001849 -
Acco13g1908 1016 Pfam Transcription factor BRX N-terminal domain 791 825 IPR027988 -
Acco13g1908 1016 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 205 215 IPR000408 -
Acco13g1908 1016 MobiDBLite consensus disorder prediction 670 689 - -
Acco13g1908 1016 Gene3D - 9 75 IPR011993 -
Acco13g1908 1016 MobiDBLite consensus disorder prediction 988 1016 - -
Acco13g1908 1016 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 364 374 IPR000408 -
Acco13g1908 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 377 IPR000408 -
Acco13g1908 1016 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 31 804 - -
Acco13g1908 1016 Pfam Transcription factor regulating root and shoot growth via Pin3 936 990 IPR013591 -
Acco13g1908 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 620 IPR013083 -
Acco13g1908 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Acco13g1908 1016 ProSiteProfiles BRX domain profile. 936 991 IPR013591 -
Acco13g1908 1016 SUPERFAMILY RCC1/BLIP-II 165 545 IPR009091 -
Acco13g1908 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 325 IPR000408 -
Acco13g1908 1016 Coils Coil 740 781 - -
Acco13g1908 1016 PRINTS Chromosome condensation regulator RCC1 signature 429 447 IPR000408 -
Acco13g1908 1016 PRINTS Chromosome condensation regulator RCC1 signature 312 328 IPR000408 -
Acco13g1908 1016 PRINTS Chromosome condensation regulator RCC1 signature 487 508 IPR000408 -
Acco13g1908 1016 PRINTS Chromosome condensation regulator RCC1 signature 271 287 IPR000408 -
Acco13g1908 1016 PRINTS Chromosome condensation regulator RCC1 signature 328 342 IPR000408 -
Acco13g1908 1016 PRINTS Chromosome condensation regulator RCC1 signature 201 214 IPR000408 -
Acco13g1908 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 219 270 IPR000408 -
Acco13g1908 1016 MobiDBLite consensus disorder prediction 674 689 - -
Acco13g1908 1016 SMART fyve_4 542 611 IPR000306 GO:0046872
Acco13g1908 1016 Pfam FYVE zinc finger 544 610 IPR000306 GO:0046872
Acco13g1908 1016 CDD FYVE_like_SF 554 606 - -
Acco13g1908 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 388 439 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1908 Acco-ChrAcco13 28426617 28431601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1908 925 990 Major Intrinsic Protein MIP AT1G31880 39.394 2.75e-09 58.5