LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g1873	ATGGAGGAGAAGAAAGAGGAGAAGACGGCAAAAGAAGTGCGGTACCGTGGTGTCCGGCGGCGGCCATGGGGGAAGTTTGCAGCGGAGATAAGAGACCCGACAAAGCAAGGGGCAAGGGTGTGGCTGGGAACATTTGAGACAGCTGAAGAGGCGGCAAGAGCGTATGACGAAGCAGCATACAACTTCCGGGGTCATCTTGCAGTTCTTAATTTCCCGGAAAACTACAATCTTCCTCCTCCGCCGCCATATCAACCATTCTCTTCTGACAGCGCAAGTTCCTCAACTGCTGGACAGCAAGCCCCAAGGGAAGTTATTGAGTTTGAATGTTTGGAAGATAAGGTATTGGAAGAGCTTCTTGAATCTCATGAGAAGAAGAACAAACAAGATTGA	390	0.4974	MEEKKEEKTAKEVRYRGVRRRPWGKFAAEIRDPTKQGARVWLGTFETAEEAARAYDEAAYNFRGHLAVLNFPENYNLPPPPPYQPFSSDSASSSTAGQQAPREVIEFECLEDKVLEELLESHEKKNKQD	129

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g1873	129	Gene3D	AP2/ERF domain	13	74	IPR036955	GO:0003700\|GO:0006355
	Acco13g1873	129	ProSiteProfiles	AP2/ERF domain profile.	14	72	IPR001471	GO:0003700\|GO:0006355
	Acco13g1873	129	SUPERFAMILY	DNA-binding domain	14	73	IPR016177	GO:0003677
	Acco13g1873	129	PANTHER	DNA-BINDING DOMAIN	4	122	IPR044808	GO:0003700\|GO:0009873
	Acco13g1873	129	SMART	rav1_2	14	78	IPR001471	GO:0003700\|GO:0006355
	Acco13g1873	129	MobiDBLite	consensus disorder prediction	73	102	-	-
	Acco13g1873	129	PRINTS	Ethylene responsive element binding protein signature	38	54	IPR001471	GO:0003700\|GO:0006355
	Acco13g1873	129	PRINTS	Ethylene responsive element binding protein signature	15	26	IPR001471	GO:0003700\|GO:0006355
	Acco13g1873	129	FunFam	Ethylene-responsive transcription factor 2	13	73	-	-
	Acco13g1873	129	Pfam	AP2 domain	14	65	IPR001471	GO:0003700\|GO:0006355
	Acco13g1873	129	CDD	AP2	14	71	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g1873	Acco-ChrAcco13	27626429	27626818	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g1873	11	125	AP2-EREBP Transcription Factor Family	AT3G23230	62.602	8.37e-47	146

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco13g1873		AP2	4.3e-16	CL0081