Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco13g1872 | ATGGGGAAGGAAAAAAGTTTCCCCCCACTTGGATTGGTTAGAAAACCACAAAGAAAGAAAAAAATACCCAAAACCCTAGCTGTCGGTCTAGCCACCATGAACTGCTGCATCTCCGGTGAGGTGCCCGAAGAGCCTGTAGTGTCAAAGAAGTCTGGGTTGCTCTATGAGAAGCGTTTAATTGAGAGGCATATTGCGGACTATGGAAAGTGTCCAATTACTGGAGAACCTCTTACTTCAGATGACATTGTTCCAATAAAAACAGGCAAGATAGTGAAGCCAAGGCCTGTACAAGCAGCAAGTATCCCGGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGATTGATGTTGTCTAATTTTGCATTGGAGCAGCAACTACACACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAACATGATGCTGCTTGCCGAGTGATAGCAAGACTTAAAAAGGAAAGGGATGAGGCAAGGTCAATACTTGCACAAGCAGAAAGGCAGTTCCCTGTTTCAACGCCAAATACAATGGCAGCGAATGCTGTTGCTATGAGCAATGGGAAAAGAGCTGCTGAAGATGATGAGCAGGCCCCTGGCGGGAAGAAATTACATACTGGAATCACTTCTGCCATTATTGATGAGCTGACCGAGTGTAATGCATCTCTGTCACAGCAGAGGAAAAAACGGCAGATTCCTGCGACTTTGGCTCCTGTTGAGGCTTTAGAAGGATATACCCAAATATCCAGTCACCCCTTTCACAAAACGAGCAAACCAGGCATTGTATCTATGGATGTTCTTTATTCTAAGGACTTAATTGCCACTGGAGGGTTAGATACAAATGCTGTGATTTTTGACCGACCATCAGGGCAGATATTATCCACACTCAGTGGTCACTCAAAAAAGGTTACAAGTGTGAAATTTGTAGCTCAGGGTGATCAGTTTATTACTGGTTCAGCAGACAAGGCAGTTCGTTTGTGGCAAAGCTCAGATGATGGTAACTATATCTGCAGACATGTATTGAAGGATCATACAGCTGAGGTTCAAGCAGTTACTGTCCATGCTACGAACAGCTACTTTGTCACTGCTTCCCTTGACAACACGTGGTGCTTTTATGAACTTTCTTCAGGGACATGTCTCAATCAGGTTTCAGACTCTTCTGGATCTTCTGGAGGCTATACATCTGCAGCTTTTCACCCTGATGGGCTTATTCTTGGAACTGGCACTGCAGAAGCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGATGGACATGTAGGGGCTGTGACTGCTATATCATTTTCTGAGAATGGCTACTTCCTTGCGACTGCAGCTCATGATGGTGTTAAACTGTGGGATCTACGGAAACTGAAAAACTTCCGGACTTTTGCTCCATATGACCCAGACACTCCAACTAATTCAGTGGAGTTCGACCATAGCGGTTCCTACCTTGCTGTTGCAGGATCGGATGTAAGGATTTACCAAGTTGCAAATGTGAAATCTGAATGGAACTGTATTAAAACTTTCCCTGATCTGTCTGGAACAGGAAAAGCCACCTGCGTTAAATTTGGTGCAGATGCAAAATATATTGCAGTGGGATCAATGGACCGGAATCTTAGAATATTTGGCCTACCCAGTGAAGAAGGTCCTACTGAGTCATAG | 1674 | 0.4421 | MGKEKSFPPLGLVRKPQRKKKIPKTLAVGLATMNCCISGEVPEEPVVSKKSGLLYEKRLIERHIADYGKCPITGEPLTSDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSILAQAERQFPVSTPNTMAANAVAMSNGKRAAEDDEQAPGGKKLHTGITSAIIDELTECNASLSQQRKKRQIPATLAPVEALEGYTQISSHPFHKTSKPGIVSMDVLYSKDLIATGGLDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGDQFITGSADKAVRLWQSSDDGNYICRHVLKDHTAEVQAVTVHATNSYFVTASLDNTWCFYELSSGTCLNQVSDSSGSSGGYTSAAFHPDGLILGTGTAEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDPDTPTNSVEFDHSGSYLAVAGSDVRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGADAKYIAVGSMDRNLRIFGLPSEEGPTES | 557 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco13g1872 | 557 | Gene3D | - | 234 | 548 | IPR015943 | GO:0005515 | |
| Acco13g1872 | 557 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 384 | 425 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 426 | 466 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | FunFam | pre-mRNA-processing factor 19 | 231 | 548 | - | - | |
| Acco13g1872 | 557 | Pfam | Prp19/Pso4-like | 98 | 163 | IPR013915 | - | |
| Acco13g1872 | 557 | SUPERFAMILY | RING/U-box | 33 | 85 | - | - | |
| Acco13g1872 | 557 | ProSiteProfiles | U-box domain profile. | 28 | 102 | IPR003613 | GO:0004842|GO:0016567 | |
| Acco13g1872 | 557 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 30 | 549 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
| Acco13g1872 | 557 | CDD | RING-Ubox_PRP19 | 33 | 86 | - | - | |
| Acco13g1872 | 557 | Coils | Coil | 147 | 167 | - | - | |
| Acco13g1872 | 557 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 339 | 380 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | Pfam | WD domain, G-beta repeat | 507 | 546 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | Pfam | WD domain, G-beta repeat | 288 | 325 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | Pfam | WD domain, G-beta repeat | 422 | 457 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 384 | 419 | - | - | |
| Acco13g1872 | 557 | SUPERFAMILY | WD40 repeat-like | 255 | 546 | IPR036322 | GO:0005515 | |
| Acco13g1872 | 557 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 426 | 459 | - | - | |
| Acco13g1872 | 557 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 294 | 326 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | FunFam | Pre-mRNA-processing factor 19, putative | 33 | 90 | - | - | |
| Acco13g1872 | 557 | SMART | Ubox_2 | 32 | 98 | IPR003613 | GO:0004842|GO:0016567 | |
| Acco13g1872 | 557 | CDD | WD40 | 258 | 546 | - | - | |
| Acco13g1872 | 557 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 92 | IPR013083 | - | |
| Acco13g1872 | 557 | MobiDBLite | consensus disorder prediction | 183 | 202 | - | - | |
| Acco13g1872 | 557 | SMART | WD40_4 | 419 | 457 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | SMART | WD40_4 | 506 | 547 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | SMART | WD40_4 | 242 | 284 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | SMART | WD40_4 | 332 | 371 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | SMART | WD40_4 | 460 | 499 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | SMART | WD40_4 | 374 | 416 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | SMART | WD40_4 | 287 | 326 | IPR001680 | GO:0005515 | |
| Acco13g1872 | 557 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 294 | 326 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco13g1872 | 33 | 557 | U-box Gene Family | AT1G04510 | 73.954 | 0.0 | 823 |