Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1853 ATGTCCTCACCTCGCCTCCAATCGTATCAACCACAATTGGCCCCATTTCATCTCGTTTCCATGGACCTTGGTGGAGGAGTTCGTAAGAGGGGAAGGCCTGAAGCTCCCTTTAATGGGAATGGTGGCGTCAAGAAATCCAGGCCAGAAATGGAGTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGCCCATTTGGCGAAGGATGTCATTTCTTGCATTATGTGCCTGGGGGTATAAAAGCTGTCTCTCAGTTGATCAATATCGGTACCAGTCCTGCAGTTCCACAAGCTCCAAGAAATACAACTTTTCCACCATCCTTTCCAGATGGCTCTTCCCCTCCGGCTGTCAAAACCCGCATATGCAACAAGTATAACACCGCCGAAGGATGCAAATTTGGTGATAAATGCCACTTCGCTCATGGTGAGTGGGAGCTTGGAAAGCCTACAGCCCCATCATATGAAGATCCCCGTTCATTCAGACAACTGCAAAGCAGGGTTGGTGGCCGGGTCGAGCCCCCACCTCCGGTTCATGGAGCTGCAGCCAGTTTTGGAGCCTCTGCTACTGCCAAGATTAGTATCAATGCTTCACTTGCAGGAGCAATCATTGGAAAAAATGGTGTCAATTCTAAGCAAATTTGTCGTGTGACAGGAGCAAAACTTTCAATACGGGATCATGACTCAGATCCAGGTCTCAAGAACGTTGAGCTGGAGGGCAGTTTTGATCAGATCAAACAAGCAAGTGCCATGGTTCATGAGCTTATTGTAAGTGTCAGTTCTGTCTCTGGGCCTCCTCCAAAAGGCATTGGACCGTATGGCCCTGCCCCAGCTAGCAACTTGAAGACAAAACTGTGTGAAAACTTTGCAAAAGGATCTTGCACTTTTGGGGAAAGGTGCCATTTTGCTCATGGAGCCGAGGAATTACGCAAGCCTGGAATGTGA 969 0.485 MSSPRLQSYQPQLAPFHLVSMDLGGGVRKRGRPEAPFNGNGGVKKSRPEMESFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQLINIGTSPAVPQAPRNTTFPPSFPDGSSPPAVKTRICNKYNTAEGCKFGDKCHFAHGEWELGKPTAPSYEDPRSFRQLQSRVGGRVEPPPPVHGAAASFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIRDHDSDPGLKNVELEGSFDQIKQASAMVHELIVSVSSVSGPPPKGIGPYGPAPASNLKTKLCENFAKGSCTFGERCHFAHGAEELRKPGM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1853 322 SMART kh_6 195 265 IPR004087 GO:0003676
Acco13g1853 322 ProSiteProfiles Zinc finger C3H1-type profile. 58 86 IPR000571 GO:0046872
Acco13g1853 322 SUPERFAMILY CCCH zinc finger 287 318 IPR036855 GO:0046872
Acco13g1853 322 ProSiteProfiles Zinc finger C3H1-type profile. 288 315 IPR000571 GO:0046872
Acco13g1853 322 MobiDBLite consensus disorder prediction 24 57 - -
Acco13g1853 322 FunFam Zinc finger CCCH domain-containing protein 120 157 - -
Acco13g1853 322 Pfam RNA-binding, Nab2-type zinc finger 63 83 - -
Acco13g1853 322 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Acco13g1853 322 PANTHER CCCH ZINC FINGER/TIS11-RELATED 41 182 IPR045877 GO:0003729
Acco13g1853 322 Gene3D - 286 319 - -
Acco13g1853 322 Gene3D - 120 157 - -
Acco13g1853 322 SUPERFAMILY CCCH zinc finger 124 156 IPR036855 GO:0046872
Acco13g1853 322 SUPERFAMILY CCCH zinc finger 59 84 IPR036855 GO:0046872
Acco13g1853 322 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 190 268 IPR036612 GO:0003723
Acco13g1853 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 290 313 IPR000571 GO:0046872
Acco13g1853 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 152 IPR000571 GO:0046872
Acco13g1853 322 CDD KH-I_AtC3H36_like 200 264 - -
Acco13g1853 322 Pfam KH domain 199 261 IPR004088 GO:0003723
Acco13g1853 322 Gene3D K Homology domain, type 1 192 285 IPR036612 GO:0003723
Acco13g1853 322 ProSiteProfiles Type-1 KH domain profile. 196 260 - -
Acco13g1853 322 SMART c3hfinal6 58 85 IPR000571 GO:0046872
Acco13g1853 322 SMART c3hfinal6 125 152 IPR000571 GO:0046872
Acco13g1853 322 SMART c3hfinal6 288 314 IPR000571 GO:0046872
Acco13g1853 322 FunFam Zinc finger CCCH domain-containing protein 283 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1853 Acco-ChrAcco13 27055050 27060419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1853 59 172 C3H Transcription Factor Family AT1G68200 26.316 9.68e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco13g1853 KH_1 1.8e-10 CL0007