LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g1806	ATGGTGTTGTGTTTAGTGTTGTGGCTGTCTCTGCTTCTGACGGAAGGAGTTCTGAGTTCTGAACATGCCAATAAATCCTGTACTTCTAGTTGTGGCATTATCACAAACATCTCATATCCATTCCGACTACGAGATGACCCACCCAACTGTGGCCATCACAACCACGAGCTAGCCTGTGGAAACAACATCACTCTCCTTCATTTACATGATTCTAGTTATCAGGGTAGGAGATTTGGAAGATACCCGGTGCTAGGAAGAGATGAGGTGCTAGGAACATACCGAGTGGTGGGAATAAACTACAACACCTACACAATCAGACTCGTAGATGCAGGAATTCAGAAGGGCAATTGCTCCTCCTTCCCTCTCTATTCCGTATCCCCATCCAATTTCATCTCTTACAAGTATTATGAAGATAGCAGTAATCCCTATGACACTTGGACTCTAAACAACTACAGAAGAGAATCTATACATTCAAGCAAGCAGGTGGGGTACCTGAACTGCAGCAATCCAGTGAGGGAGGACACAGCGTATGTGGACACGGCTCCCTGTGTGAATTGGGAATCCAAAAGAGGAGGCTATCTTTATGCTGTGGCTGGAGACTTGCTAGCTGACCAGTTTAAACCTCAGTGTCGTCTGAAATTGGTGACCCTCATAGCCCAGGATTGGAAATCGATGGTGCCTGGTGGAATCAAGTCCTACACTGATATCCACACACTGCTTTCCTCTGGATTTGAGCTTTCATGGTTGCCACGAGTTTGTGCTGATAATTGTCCAAATGACACTTACTGCGATTTCACCCCAGAAAGTCAAAGTCCGCAATGCGTGCCACGAGATACATGTGGTTCCCCCCTTGGAATAAATCAACATGGTTGCGGAAAGCTGCCAATGCTGCGCGTATTTGCAGAAGATTTTGTCCATGGAGTTATAAAAGGACTACTATGGATAGTGAACATGTATGTAGAGGACCAAACATACCATGATTTGGGACCATCAAAGCTTCTGATCAAATTAGGAAAATTCATTGGAAGATTTGTTATCCCATATATCATCGCAATGAGATTTTTGCTTGGTGTTATCTTCCTGTCTATATTGTTGATTTATACATGGCATAGAAGACACTTATCAATATATGAAGATATTGAAGATTTTATAAGGCTTCATGACCTCATTCCAATAAAATACTCTTACAAGGAATTAAAGACCATGACTGAAGGTTTCAAGAATAAGTTAGGTGAAGGAGGATTTGGCATTGTTTATAAGGGAAAGCTAGGGAGTGGACCTGATGTTGCTATCAAAATGTTAGGCAAATCCAAAGCTAACGGCCAAGAATTTATCAGTGAAGTGGCAACTATAGGGAGGATACATCATTTCAATGTGGTCCATCTTGTAGGTTTTTGTGTGGAAGGGACAAAACGGGCTCTAGTATATGAATTCATGCCCAATGGTTCATTGGATAAATATATATTTTCTAAAGAAGGAAGTATCTCTTTAAGTTGTCATAAAATACATGAGATATCTCTGAGAATAGCTCATGGAATTGCTTACCTTCATCATGGCTGTGACATGCAAATATTGCATTTTGATATCAAGCCCCACAATATTCTACTAGATGAAAACTTCAATCCAAAGATTTCAGATTTTGAACTGGCAAGATTATATTCTATTGATGATAGCATTGTAACTCTAACTGCGGCAAGAGGGACAATCAGATACATGGCTCCAGAATTGTTCTATAAGAATATTGGGGGAGTGTCTTATAAAGCTTATGTTTACAGTTTTGGAATGCTTTTTATGGAAATGGCTAGTCAAAGAAGGAATTTGAATCCACATGTTGAACATTCAAGTCAACTTTACTTTCCCTTGTGGATTTATGATCAATTTGGTGAAGAAAAAGATATAGAAATGGAAGATTTCAGTAAAGAGGACAAGGATTTAGCAAAGAAGATGTTTATAGTGGCACTATGGTGTATACAACTAAAGCTTGCAGATCGCCCTTCAATGAGTAAAGTAACAGAGATGCTAGAAGCAGATGATGTCGAAAGTCTTGAAATGCCCTCAAAACCTTCTTTATATCCTAATGAAGAAGTTTTGGTGGATGATGGATGCTACTCTAGCCATACAACATCAACTATCTCGGTGCATTCTCATAATAGTCAAGGTGAGTGTATAAGTTAG	2175	0.3995	MVLCLVLWLSLLLTEGVLSSEHANKSCTSSCGIITNISYPFRLRDDPPNCGHHNHELACGNNITLLHLHDSSYQGRRFGRYPVLGRDEVLGTYRVVGINYNTYTIRLVDAGIQKGNCSSFPLYSVSPSNFISYKYYEDSSNPYDTWTLNNYRRESIHSSKQVGYLNCSNPVREDTAYVDTAPCVNWESKRGGYLYAVAGDLLADQFKPQCRLKLVTLIAQDWKSMVPGGIKSYTDIHTLLSSGFELSWLPRVCADNCPNDTYCDFTPESQSPQCVPRDTCGSPLGINQHGCGKLPMLRVFAEDFVHGVIKGLLWIVNMYVEDQTYHDLGPSKLLIKLGKFIGRFVIPYIIAMRFLLGVIFLSILLIYTWHRRHLSIYEDIEDFIRLHDLIPIKYSYKELKTMTEGFKNKLGEGGFGIVYKGKLGSGPDVAIKMLGKSKANGQEFISEVATIGRIHHFNVVHLVGFCVEGTKRALVYEFMPNGSLDKYIFSKEGSISLSCHKIHEISLRIAHGIAYLHHGCDMQILHFDIKPHNILLDENFNPKISDFELARLYSIDDSIVTLTAARGTIRYMAPELFYKNIGGVSYKAYVYSFGMLFMEMASQRRNLNPHVEHSSQLYFPLWIYDQFGEEKDIEMEDFSKEDKDLAKKMFIVALWCIQLKLADRPSMSKVTEMLEADDVESLEMPSKPSLYPNEEVLVDDGCYSSHTTSTISVHSHNSQGECIS	724

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g1806	724	ProSitePatterns	Protein kinases ATP-binding region signature.	410	432	IPR017441	GO:0005524
	Acco13g1806	724	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	377	695	IPR045874	GO:0004672
	Acco13g1806	724	Gene3D	Transferase(Phosphotransferase) domain 1	479	686	-	-
	Acco13g1806	724	FunFam	Os07g0541700 protein	479	568	-	-
	Acco13g1806	724	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	524	536	IPR008271	GO:0004672\|GO:0006468
	Acco13g1806	724	Pfam	Wall-associated receptor kinase galacturonan-binding	27	109	IPR025287	GO:0030247
	Acco13g1806	724	ProSiteProfiles	Protein kinase domain profile.	404	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g1806	724	FunFam	serine/threonine-protein kinase PBS1-like	376	478	-	-
	Acco13g1806	724	SUPERFAMILY	Protein kinase-like (PK-like)	390	675	IPR011009	-
	Acco13g1806	724	Gene3D	Phosphorylase Kinase; domain 1	383	478	-	-
	Acco13g1806	724	Pfam	Protein kinase domain	407	670	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g1806	724	SMART	serkin_6	404	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g1806	Acco-ChrAcco13	25381453	25388491	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g1806	393	720	Receptor kinase-like Gene Family	AT5G38280	48.048	4.66e-94	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Acco13g1806		Pkinase	2.6e-42	CL0016