Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1772 ATGGAAGATGATGGAACGATATGCAACACAAGGCTGAGTCTAGGGCTTGGAATAGGAGGCTATGTGATGCCATTAAAGAAGCAGAAGTTTGAAGAAACCATTATTAATAAAGAATTTATCAGTTTGAAGACCAGATCAATCGATGATGAAGAAGAAGAAGAAGATGATGATGAAAAAAGCAGTCATAGGAATAGTTGCAGAAAGAAACTGAGACTCAGCAAGGAACAATCCGCCATGCTTGAAGATAGCTTTCAGCTCCATAGCTCTCTCAACCCACTCCAGAAACAAGAACTTGCCCAGAGATTGAATTTGAAGCCCAGACAGATCGAAGTTTGGTTTCAGAACAGAAGAGCGAGGAAGAAGTTGAAGCAAACGGAATTAGACTGTGAGTTGCTGAGAAAATGTTGCGAAAACCTAAGAAAGGAGAACATAAGGTTGAAGAAAGAAGTAGAGGAACTACGAGGCGGCCTGAAATTAAGTTGA 483 0.4058 MEDDGTICNTRLSLGLGIGGYVMPLKKQKFEETIINKEFISLKTRSIDDEEEEEDDDEKSSHRNSCRKKLRLSKEQSAMLEDSFQLHSSLNPLQKQELAQRLNLKPRQIEVWFQNRRARKKLKQTELDCELLRKCCENLRKENIRLKKEVEELRGGLKLS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1772 160 Coils Coil 122 156 - -
Acco13g1772 160 SMART halz 123 160 IPR003106 GO:0006355|GO:0043565
Acco13g1772 160 MobiDBLite consensus disorder prediction 47 68 - -
Acco13g1772 160 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 42 159 - -
Acco13g1772 160 SMART HOX_1 65 127 IPR001356 GO:0003677
Acco13g1772 160 Pfam Homeobox associated leucine zipper 123 156 IPR003106 GO:0006355|GO:0043565
Acco13g1772 160 CDD homeodomain 67 124 IPR001356 GO:0003677
Acco13g1772 160 Pfam Homeodomain 67 121 IPR001356 GO:0003677
Acco13g1772 160 Gene3D - 71 121 - -
Acco13g1772 160 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Acco13g1772 160 SUPERFAMILY Homeodomain-like 55 124 IPR009057 -
Acco13g1772 160 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1772 Acco-ChrAcco13 24665535 24667070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1772 44 160 Homeobox Transcription Factor Family AT4G37790 62.393 1.85e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco13g1772 Homeodomain 3.3e-16 CL0123