LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g1766	ATGTCTTCTCCGGGTGGTGGTAATTCTTCTGGGGCTTCAGATATGGACCAGAGGAAGAGGAAGAGGATGGAGTCGAACCGGGAGTCAGCTCGGCGATCGAGGATGAAGAAGCAGCAGCATCTGGATGAATTGGCGAGGCAAGTGGGAGAGCTGATGAAGGAGAATGAAGAAATAATGAAGAAGCTGAGCATTACCAACCAACTTTATGGGAATATGGAGGCTCAAAACGCTGTGCTGAGGACTCAAATGGCTGAGTTGACCAACCGATTGGACTCGCTCAATGAGATCATAAGCTTCATAAACGCATCAACCAGTAATCATAATTATCCTCTCTTGGATGATGAGGTTAATTACAATAATGACCCTGAAATGATCTCAGATTGTGGCTTCTTCAACCCTTGGATTAATCAACCCATCATGGCTTCTGGCAATAATAATATCATGTATTGA	450	0.4444	MSSPGGGNSSGASDMDQRKRKRMESNRESARRSRMKKQQHLDELARQVGELMKENEEIMKKLSITNQLYGNMEAQNAVLRTQMAELTNRLDSLNEIISFINASTSNHNYPLLDDEVNYNNDPEMISDCGFFNPWINQPIMASGNNNIMY	149

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g1766	149	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	16	79	IPR004827	GO:0003700\|GO:0006355
	Acco13g1766	149	FunFam	BZIP transcription factor	16	67	-	-
	Acco13g1766	149	SUPERFAMILY	Leucine zipper domain	18	72	IPR046347	GO:0003700\|GO:0006355
	Acco13g1766	149	MobiDBLite	consensus disorder prediction	14	41	-	-
	Acco13g1766	149	SMART	brlzneu	14	78	IPR004827	GO:0003700\|GO:0006355
	Acco13g1766	149	Coils	Coil	27	61	-	-
	Acco13g1766	149	MobiDBLite	consensus disorder prediction	1	41	-	-
	Acco13g1766	149	Gene3D	-	16	72	-	-
	Acco13g1766	149	PANTHER	BZIP TRANSCRIPTION FACTOR 44	7	146	-	-
	Acco13g1766	149	CDD	bZIP_plant_GBF1	19	69	IPR045314	GO:0003700\|GO:0006355
	Acco13g1766	149	Coils	Coil	69	103	-	-
	Acco13g1766	149	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	21	36	IPR004827	GO:0003700\|GO:0006355
	Acco13g1766	149	Pfam	bZIP transcription factor	18	76	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g1766	Acco-ChrAcco13	24481656	24482105	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g1766	13	149	bZIP Transcription Factor Family	AT4G34590	49.306	7.72e-33	112

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Acco13g1766		bZIP_1	4.9e-11	CL0018