Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1682 ATGGTCAGATTTCAGTTTCTGCGTTCACATCTATGTCTGCTAGTTTCAGTTTCTTGTGTGCTTATTAGTTGTTTGGCAGATAATGGGATAGCTGCACAATTGAACGATGATGTTCTTGGTCTGATAGTGTTTAAATCCGACCTTTATGACCCTTCTGCTCATCTTGCTTCATGGAATGAGGATGATGGAAGTGCTTGCTCATGGCGGTTCGTGCAGTGTAATCCAGCGACTGGGAAAGTTTCCGAGGTCTCACTTGATGGATTAGGCTTATCTGGGAAAATAGGAAGAGGTCTTGAGAAGTTACAGCATCTCAAGGTCTTGTCACTGTCTCATAACAACATAACTGGAAGTATTAGTCCTTCACTTTCACTTTCAAACACTCTTCAAAGACTAAACCTCAGTCACAATAGCTTATATGGTTCCATTCCCAGTTCTTTTGTGAATATGGATTCAATGAAGTCTCTTGATCTATCAGAGAATTCATTCTCAGGACAAGTCCCAGAAAGCTTGTTTGAAAACTGTTCTTCCCTTCATCATCTTTCTCTGGCTAGGAACATGTTTGAAGGATCAATTCCCAGCACAATCTCTAGATGTTCCTTATTGAACAGCCTTGATCTTTCGAAAAACCGGTTCGGTGGTAGTGTGGATTTCAATGGGATTTGGTCTTTGACTAGGCTTAGGACTTTGGATTTGTCAAATAATGCGTTATCTGGAAATTTGCCTCCTGGGGTATCAGCCATACATAACTTGAAAGAGATTCTGCTACAAGGTAATCACTTTTCAGGACCATTACCTTCTGATATTGGACTGTGCTTGCATTTGAATAGGTTGGATTTTAGTGATAATATGTTCAGTGAAGCACTTCCAGAGTCACTTGGGAGACTTAGATTTTTGAACTCCTTCAAGGCATCAAATAACTTATTAACCAATGAAATCCCTCAGTGGATTGGTAAAATGTCAAGTCTGGAATACCTTGATCTCTCAGGCAATCAGTTATCCGGGACCATCCCGGATTCGATCAGTGATTTGAGATCACTGAGTTATCTGGGTCTCTCAGATAACGAGCTTGTGGGAAACATTCCATCATCATTGGTTTCATGTACTAAGTTATCATCCATTCATCTCAGAGGTAATGGTTTCAATGGTAGCATACCAGAGGGACTGTTTGGCGTAGAATCATTAGAAGAAGTGGACCTGTCTCGTAATGGGCTAAAGGGCGAAATCCCTGCAGAAATTATTCATGCTTTTAAACTGAAATATTTGAATCTATCTTGGAATGATTTTAACTCCCGAGTGCCTCCAGAGTTGGGTATGCTTCAGAATCTGACAGTTTTAGATCTTCTGAGCAATTCACTTTATGGCTCTATTCCAGAGGGTTTATGTGATTCAGGCAATTTGGCTATTCTTCAACTGGATGGAAACTCATTAAATGGTGCTATCCCAGATGAGATTGGAAATTGCACATCTCTTTACTTGCTGAGCTTGTGTCACAATAACCTGAGTGGTTCAATTCCCAAGTCCATGTCAAAACTTAAAGAGCTCAAAGTTCTGAAATTGGAATTCAATGAACTGAGTGGAGAGATACCACGGGAGCTTGGGATGCTGCAGAATCTTCTTGCTGTGAATATATCATACAACAGACTCACAGGCAGGCTTCCTAGTGGTAGCATATTTCAAAACTTAGACAAAAGTTCCCTAGAAGGAAACTTTGGTCTTTGTTCACCCTTACTGAAAGGGCCATGTAAGATGGATGTGCCCAAGCCACTGGTTCTAGACCCGAATGCCTATAACAATCAAATGGGCAGGCCGAGAAATGAATCGTCCACGGGTACCTCGGGCATCACCCGTCGCCACCGGTTCCTTAGTGTTTCTGTTATTATCGCAATTTCTGCTGCTTTCTTGATCTTATTGGGTGTCATTGCTATTAGCCTTTTGAATGCTTCTGTGAGGAGAAGGCTGACATTCGTTGATAATGCTTTGGAAAGCATGTGTTCATCATCTTCAAGATCAGGAAGTCCACCCACAGGAAAGCTCATTCTGTTTGATTCAGGTCGGTCCTCACTTGATTCAATCAGCAACCCAGAAAACTTGTTGACCAAGGCATCTGAGATAGGAGACGGAGTGTTTGGAACAGTTCACAAGGTTCCTTTGGGATCACAAGGTAGAATGGTGGCAATCAAGAGGCTTGTGACTTCAAACATTGTCCAATACCCTGAAGACTTTGATAGGGAAGTAAGAATCTTAGGGAAAGCAAGGCACCCTAATCTAATAGCACTGAAAGGATACTATTGGACTCCCCAACTGAAACTTTTGGTCACGGAATATGCACCAAACGGTAGCTTGCAATCCAAGCTACACGACCGGCTTCCTTCATCTCCACCTCTTTCATGGGCTGATAGGTTCAAAATTTTGCTAGGAACAGCAAAAGGCCTAGCTCACTTACACCATTCATTCCGCCCGCCGATCATTCACTACAACTTGAAGTCAAGCAACATTCTACTCGATGAGAACAACAATCCAAAGATCTCAGATTTTGGATTGGCCCGGCTTCTGACAAAGCTAGAAAGGCATGTGATGAGCAACAGGTTTCAGAGCGCACTAGGGTACGTAGCGCCGGAATTGGCATGCCAGAGCTTGAGGGTGAATGAGAAGTGTGATATCTACGGCTTCGGGGTGATGATTCTTGAGGTTGTGACAGGAAGGAGGCCTGTGGAATACGGAGAAGACAATGTTGTGATACTGAAAGACCATGTGAGGGTGATGCTTGAGCAAGGAAATGTGTTGGAATGTGTGGATGCAAGCATGACACAGTATCCTGAAGATGAGGTTCTCCCAGTTCTGAAGCTTGCATTGGTATGCACCTCACAGATACCTTCAAGCAGGCCTTCCATGGCAGAAGTAGTTCAAATTCTGCAGGTTATCAAAACTCCTGTTCCTCACAGAATGGAAATGTTTTAG 2958 0.4277 MVRFQFLRSHLCLLVSVSCVLISCLADNGIAAQLNDDVLGLIVFKSDLYDPSAHLASWNEDDGSACSWRFVQCNPATGKVSEVSLDGLGLSGKIGRGLEKLQHLKVLSLSHNNITGSISPSLSLSNTLQRLNLSHNSLYGSIPSSFVNMDSMKSLDLSENSFSGQVPESLFENCSSLHHLSLARNMFEGSIPSTISRCSLLNSLDLSKNRFGGSVDFNGIWSLTRLRTLDLSNNALSGNLPPGVSAIHNLKEILLQGNHFSGPLPSDIGLCLHLNRLDFSDNMFSEALPESLGRLRFLNSFKASNNLLTNEIPQWIGKMSSLEYLDLSGNQLSGTIPDSISDLRSLSYLGLSDNELVGNIPSSLVSCTKLSSIHLRGNGFNGSIPEGLFGVESLEEVDLSRNGLKGEIPAEIIHAFKLKYLNLSWNDFNSRVPPELGMLQNLTVLDLLSNSLYGSIPEGLCDSGNLAILQLDGNSLNGAIPDEIGNCTSLYLLSLCHNNLSGSIPKSMSKLKELKVLKLEFNELSGEIPRELGMLQNLLAVNISYNRLTGRLPSGSIFQNLDKSSLEGNFGLCSPLLKGPCKMDVPKPLVLDPNAYNNQMGRPRNESSTGTSGITRRHRFLSVSVIIAISAAFLILLGVIAISLLNASVRRRLTFVDNALESMCSSSSRSGSPPTGKLILFDSGRSSLDSISNPENLLTKASEIGDGVFGTVHKVPLGSQGRMVAIKRLVTSNIVQYPEDFDREVRILGKARHPNLIALKGYYWTPQLKLLVTEYAPNGSLQSKLHDRLPSSPPLSWADRFKILLGTAKGLAHLHHSFRPPIIHYNLKSSNILLDENNNPKISDFGLARLLTKLERHVMSNRFQSALGYVAPELACQSLRVNEKCDIYGFGVMILEVVTGRRPVEYGEDNVVILKDHVRVMLEQGNVLECVDASMTQYPEDEVLPVLKLALVCTSQIPSSRPSMAEVVQILQVIKTPVPHRMEMF 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1682 985 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Acco13g1682 985 ProSiteProfiles Leucine-rich repeat profile. 321 343 IPR001611 GO:0005515
Acco13g1682 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 34 194 - -
Acco13g1682 985 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 692 775 - -
Acco13g1682 985 ProSitePatterns Protein kinases ATP-binding region signature. 704 727 IPR017441 GO:0005524
Acco13g1682 985 Gene3D Transferase(Phosphotransferase) domain 1 780 982 - -
Acco13g1682 985 Pfam Leucine Rich repeat 101 116 IPR001611 GO:0005515
Acco13g1682 985 Pfam Leucine Rich repeat 416 429 IPR001611 GO:0005515
Acco13g1682 985 FunFam Inactive leucine-rich repeat receptor-like protein kinase 390 584 - -
Acco13g1682 985 SUPERFAMILY Protein kinase-like (PK-like) 697 980 IPR011009 -
Acco13g1682 985 SUPERFAMILY RNI-like 218 554 - -
Acco13g1682 985 Gene3D Ribonuclease Inhibitor 192 288 IPR032675 -
Acco13g1682 985 Pfam Protein kinase domain 700 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1682 985 SMART LRR_typ_2 149 173 IPR003591 -
Acco13g1682 985 SMART LRR_typ_2 101 125 IPR003591 -
Acco13g1682 985 SMART LRR_typ_2 391 415 IPR003591 -
Acco13g1682 985 SMART LRR_typ_2 223 247 IPR003591 -
Acco13g1682 985 SMART LRR_typ_2 439 463 IPR003591 -
Acco13g1682 985 SMART LRR_typ_2 511 535 IPR003591 -
Acco13g1682 985 SMART LRR_typ_2 319 343 IPR003591 -
Acco13g1682 985 Gene3D Ribonuclease Inhibitor 292 584 IPR032675 -
Acco13g1682 985 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Acco13g1682 985 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 336 972 - -
Acco13g1682 985 SUPERFAMILY L domain-like 81 288 - -
Acco13g1682 985 PRINTS Leucine-rich repeat signature 319 332 - -
Acco13g1682 985 PRINTS Leucine-rich repeat signature 226 239 - -
Acco13g1682 985 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 776 980 - -
Acco13g1682 985 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 290 384 - -
Acco13g1682 985 ProSiteProfiles Leucine-rich repeat profile. 103 125 IPR001611 GO:0005515
Acco13g1682 985 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 195 289 - -
Acco13g1682 985 ProSiteProfiles Protein kinase domain profile. 698 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1682 985 SMART LRR_sd22_2 223 252 - -
Acco13g1682 985 SMART LRR_sd22_2 101 124 - -
Acco13g1682 985 SMART LRR_sd22_2 439 462 - -
Acco13g1682 985 SMART LRR_sd22_2 319 345 - -
Acco13g1682 985 Pfam Leucine rich repeat 304 356 IPR001611 GO:0005515
Acco13g1682 985 Gene3D Phosphorylase Kinase; domain 1 698 779 - -
Acco13g1682 985 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Acco13g1682 985 CDD STKc_IRAK 704 972 - -
Acco13g1682 985 Pfam Leucine Rich Repeat 128 148 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1682 Acco-ChrAcco13 22038696 22041867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1682 8 982 Receptor kinase-like Gene Family AT3G28040 62.339 0.0 1205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Acco13g1682 Pkinase 9.5e-43 CL0016