Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1669 ATGGGTTGCAAAAAATTAGCAATGATGACCCTCGAGAATAGGAATGCTCGCATGATGTTGTTTGAGAGGAGGAAAAAGGGCTTATTGAAGAAGGCATTTGAACTTTCCACCCTATGTGGAAATGATGTTTGTGTGATAATTTTCCCTCCTCCAAATTCTGAAAATTCTAAAGCTGAAACATTTCCTCAAGATCCCATACAAGTGAAAGTGTATAACGCCAAGAAGAATTGCCCTGAGAAACAGAGGAAGAACTACGATCACCGTGAGTTCTCCAATGATAGGAAGAACCAGGTTGAAGCTAAGACCTTCAAATTTTGTGAACAGAAACTCAAGATGTTATGTCCAATAGATGATAGCCTCCACAACCTAGGAGAGGATCAACTGAGGATGTTCATTTCTATGCTGGATTATAAAATTCAAGATTGTGATCATACAATTGGGCTATTAAAAGCAAAGAAATCAAAGATGACAGTTGTTCCAATGGGTTTGAACCTGTTGGATTGTCATTGTTTAGAAATTCTTGTTGCTATAGTTCCTCCCCATGATGTTTCAGAGGAAACCCACATGAGCTTTGTGCAGAATACAAGTGATAAAGCTAATGTTGCCTCTCTCTCAAATCTAGTGATGCAGCTAGTTGGTTATAACAACACTGACTTTGTAGATGATAAAGTGCCTGGTTTTGGATTATAA 690 0.3826 MGCKKLAMMTLENRNARMMLFERRKKGLLKKAFELSTLCGNDVCVIIFPPPNSENSKAETFPQDPIQVKVYNAKKNCPEKQRKNYDHREFSNDRKNQVEAKTFKFCEQKLKMLCPIDDSLHNLGEDQLRMFISMLDYKIQDCDHTIGLLKAKKSKMTVVPMGLNLLDCHCLEILVAIVPPHDVSEETHMSFVQNTSDKANVASLSNLVMQLVGYNNTDFVDDKVPGFGL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1669 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 61 IPR002100 GO:0003677|GO:0046983
Acco13g1669 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 135 - -
Acco13g1669 229 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Acco13g1669 229 CDD MADS 2 53 - -
Acco13g1669 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco13g1669 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco13g1669 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco13g1669 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco13g1669 229 SUPERFAMILY SRF-like 4 87 IPR036879 GO:0003677|GO:0046983
Acco13g1669 229 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1669 Acco-ChrAcco13 21667522 21668211 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1669 5 66 MADS-box Gene Family AT2G45660 45.161 3.63e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco13g1669 SRF-TF 5.8e-16 No_clan