Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1666 ATGGGGAGAGGAAGATTGGCGATGAAATTGATAGAGAAAGAGAAATCGAGAAAGGCAACATTTCTGAGGAGAAAGAATGGAATTATGAAGAAAGCTTGTGAGCTTTCTACACTATGTGGAGTTGATTGTTGCTTGATCGTTTATGGTCCTAACTCCATTAATGACCTTCCTGAGATTTGGCCTGAAGATCGCATCCAGGTGCGTAGAATCATTGAGAAGTACAAGTTTAAGATGGCTGAGAAAAGTCCCAAGAAGTACAATGTGACGGAGTTCTTCAAGGACAAGAAGAATAAGGTGGAAGCCGAAGTGTGCAAGCTCCGGCAAGAGAGGCTCCAGAAACTCTATCCAACGTGGGACTTCACTTTCAACAAACTTGGGGAAGAACAGCTGAGGATGTTTGTCGCCATCTTGGATTCCAAAATTGAAGATTGCGAAGAGAGGATTCAAATGTTGAAGAAGAAACGTTACATAGAGGAAAAACAACAACAAATAGCTGAATTATCCTCAGACAAATCATCAGCTTCAGCTTCAAACCGAAGCCACCATAACTTCATTCACAGCAACAACAGTAGTACTGCTATGTTGTCAGCTCATCATCATCAAACCCTAGATTTCCCTCTCAAGTTTGAGGATAATAATCTTCATCATCATCTGATGCTTCAACCCTTTCATCCAAATCTGTTGCCATTGACGATGATCACACTGAATGATTCTGCAGAGACAACACAGAATGATGCTGCTTTTGATCATTGTGATCTGATGATGAGAAAAGAATCTTATTGTCCGTCTTTTTCATGGTGTTACAGTAGTAGTAGTAATAACAACAATAACAACAATTACTCTCCTAATTATCTGCAGAATAGTAATAGTAATATTCTGCAGATTCATCCCCATGAAGTAAATTTGCAGGTGAATAATAATGTTCCAGCAGCTCCTCTAATGATGGAAGAATTTCAGAGCTATCATCACTTTGGGTATAATCAACATGATCTGCTTCAAGTTCATCATCAGAAATTCAACTATATGGACCAAGATAAGTAA 1041 0.39 MGRGRLAMKLIEKEKSRKATFLRRKNGIMKKACELSTLCGVDCCLIVYGPNSINDLPEIWPEDRIQVRRIIEKYKFKMAEKSPKKYNVTEFFKDKKNKVEAEVCKLRQERLQKLYPTWDFTFNKLGEEQLRMFVAILDSKIEDCEERIQMLKKKRYIEEKQQQIAELSSDKSSASASNRSHHNFIHSNNSSTAMLSAHHHQTLDFPLKFEDNNLHHHLMLQPFHPNLLPLTMITLNDSAETTQNDAAFDHCDLMMRKESYCPSFSWCYSSSSNNNNNNNYSPNYLQNSNSNILQIHPHEVNLQVNNNVPAAPLMMEEFQSYHHFGYNQHDLLQVHHQKFNYMDQDK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1666 346 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Acco13g1666 346 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Acco13g1666 346 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco13g1666 346 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco13g1666 346 Coils Coil 134 177 - -
Acco13g1666 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Acco13g1666 346 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Acco13g1666 346 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Acco13g1666 346 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Acco13g1666 346 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1666 Acco-ChrAcco13 21595781 21597582 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1666 1 151 Type I MADS-box Gene Family AT5G55690 36.129 4.75e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco13g1666 SRF-TF 4.1e-18 No_clan