Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1626 ATGGCTTCATCCTTGGAGGAACTCCTAGCAAGAGAAGGGTTCAAGGGAAGTAGAAGGCTCGCAAGATCCCGATCTTCCCTCCAGTCTAATCCTGAAAAATTACGTCATTACTCTATCAGGGACCAGGAAAGGAGGCTATCTGTGTCAGAGGACAGAATTAGAGTGGAGAGAACGAAATCTTATGTCTCACAGTATCGGATTGGGGATGACTTTTTAAATAGAGATACTGCTCAGAGCAGTAGACCAAGGGATAATCTTGCTGAAGGAGAGAATTTGGATGAGGGATTGAAGAATGACATTGTTGAGAAATCTTCCAGCAATACGAAGTTAAGTAAAAAATTTGATAGCAAACCACTAGGACACAAACCTAGGAATGAGATAATCGAGGTAGGTGAGCAAGAGGACAGAGTTAAAGATGTTTATTCCAATGAATTGACAATTGCAAATAGAGGGAAAGAAGAGTATCTGAATGACTTTAGGAATGGGGATAAGTGGCCCAGGATGCTACTCAAGGATGCAAAGTTGGATAAGAGGCATAGCAGCAGTTCTAGTACACACAAGGTTGGACAGTTGAGTGGAAGTATAAAGAAGAATATAAAGCGGCAGGAGAGATCATACAGTCAATCAAGCAGTGAAAGCTTTGAAAATATTTATGAAAAAAATCATGGGCATGCTTTGCAGACACCGGCTGATGTAGCTCTCGATGAAGTTGCTGTACAAGCAGTTGTTTCTATTCTAAATGCATATATAAAACGCTTTCTAAAAGATGAAGATTTTCGGAGCACATTACGTCACAATTGTTTTTCCTCCTTGAATTTCATTGAACTGGAAGATGAGAACAGTACTGAGATCAAAGTCATAAGAAGCCTTGAACAAGCAATTGATACAATAGAACAAGCTGCTGAGGAATCTGTATCTGAAAAAGAATTGAAAAGAACCTCTTTGCAGCTAAGCATTATCACAGGTCTAAGCTTAAATGAATTGAAGTATGGTTTTACATGTGGGATACCTAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTTGTCTACGAGATACAGAGAAAAGGTAAGGTATCGGCAAAGCATCTTTTGCAAGTGTTTTGTGATTCACCTTCTCAGGCGCGAACAACATTGCTGCCTGAATTGTGGGAGTACTTATTTTCTCCACATCTTTCTCATTTGAAGGCATGGTACAAAAGGGAAGTTCATATGCTACTGGATATGCCAAGCAGAACAAGAAAAGTAAAGAATCTTGAAAAAGTGTATAATGAGCATTTGGATTCTGGGACATATTCATTTGCTGTATACTACAAGAACTGGCTCACTGAAGGTGCAGAAGCTCCATCAGTTCCTTCTGTCACCATTCCATCAATATCTGCTTCAGAAAGTCACCATGGAAGTCCCCTTGGTCAATCTTCTGAATCAGCTTCACCTGTTGATTCATTCTCACCTCAGACAATGGTTAGCAAAAAACTGTATGATTCTGTCTTTGGTGGCTCGAGTAAAGCTGGAATTGAAGAAGAGAAAGATAATGCCATAGAAGATAACTTACACAACCACATGAGACACTCATGCAGTTCATCCATTGCTGAACAAAAATTAGCATTTGTCTCTGAAATGGTTAAATATACAGAAGAAGATACTCAAGAAGATTCTAAGAAGATGACGCTGGCTATTGAGCTCCATACTAAAGGAACCTCATTGCTATATGATCTACCACATGAGAGCACTAATGAAGTCACCCTTAGCAAGGCGACAGGATCTGTTTTAGGCATGCAAGATGCCAAGAGGCATTTTGGTCTTATTGTGTCTACTGGTTCACTGTCCAGTGAGGAATCAGTCTCCAGCTGTGTTGTAAATCCAATAGAGACTACTTCTTCTCCTAAAGGATTATATTTTCCCACTATTCCACAGGAGTTCATTTGTCCTTTGACCGGAACTTTATTTGAGGAACCAACTACCCTTGAGACTGGTCAAACCTATGAACGAGCAGCCATCAATGCCTGGTTTGACAAGGGAAACAGAACTTGCCCGGTGTCTGGAAATAGTTTAGATTGTGTTGCGATGCCATTAACTAACCTTGTTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAGCAAATTAATCATATACTGGATTTTGCTTCTCAAATTGCAGACAATGAAAGCCATAAGTTGAAACATGATGAAGCTGCTATTTTTAATTTAGAGAGTCTCTTCACTTCATTGAATGGATCAAACAAAAGAAATTATGTCAAACAACTCATCTCTATAGGGCTTCTGTCATTTATTTTTAGGAGGCTTGAATTGGGAAATGTTGAAGAGAAAACACGTGCGTTGGCACTTTTGCTAAATTGCAGTGAAGCAGATTCAAGTTGCATATATCAGATCGCAAGGAACATTGACAAAAAATTTCTTCTAGAGCTTCTTTGCAGCAACGATGTTGCCCCAAGAACAACCGCAATTCCATTGCTTGCTGAATTATTTTCTCTTAAAAGAAATGATGCTATTTCCTTCTTAAGTGACTTTGCTGGTCCAGATGTATTGAACACAATGAATGTTCTACTTTTGTTTCTTAAGAATTCTTCTCTGCATCAACAACCCCTTGTTGCAGTTCTTCTGTTGCACTTCGATTTACTGGACAACTTATCGCCGAAGACTAAGCCTCAAACACATAGCATATACAGAGAGGAGGCAGTGAATGTCATTGCAGTTGCTCTTGATGCCAGCTTACACGATGACAAGGTCCAAGAAAAGTGTTGTAAGGCATTGCTTATTTTGAAAGGACTTTTTGCTACCAAAGGAAAGAAAGAAGCCAAGACTGACATTTTAAAGCAACATGAAGATGAAAATGATAGTTCAGAAGTCAATGCTTACGAGCATGAAGAAGAGGGTTTAATATCATTGGAAGATGAAGATGAAAAGGATATAGTGTGGCTGGTGAACTTGTTAGAATTGTTGATTGGTGATGGAGAAAGCCCATTTTTGAAGAACATTTCAAGATGTTTAGCCTCTAGATACCTGGATTTGGTGAAGGTGTGCTTACTAACAGTTGCATGGCTCGGTTCCAGACTTTCTCTACTAAGTAACTCTAGTTCACCCCTTCCTGCATTCCCAGCCATCATCTATCAGATGAAAGGAATACTGCGGAGTGGAGATCTTGAGCTCAAGACTCTTGCTTCTTTGTCCTTGTTTTATTTCAGTAAGATACCAGAAAGCAAAGCCCTTTTGATGACTATGGCGGAAGATATTGTTGCTCCTCTGCATAGACTTATTGATGTAACATGGACTGCAAAGCAGCTTCTTGTAATGTTAGGGGAGGAATTGTAA 3339 0.3947 MASSLEELLAREGFKGSRRLARSRSSLQSNPEKLRHYSIRDQERRLSVSEDRIRVERTKSYVSQYRIGDDFLNRDTAQSSRPRDNLAEGENLDEGLKNDIVEKSSSNTKLSKKFDSKPLGHKPRNEIIEVGEQEDRVKDVYSNELTIANRGKEEYLNDFRNGDKWPRMLLKDAKLDKRHSSSSSTHKVGQLSGSIKKNIKRQERSYSQSSSESFENIYEKNHGHALQTPADVALDEVAVQAVVSILNAYIKRFLKDEDFRSTLRHNCFSSLNFIELEDENSTEIKVIRSLEQAIDTIEQAAEESVSEKELKRTSLQLSIITGLSLNELKYGFTCGIPNYKLSACAHLYLSVVYEIQRKGKVSAKHLLQVFCDSPSQARTTLLPELWEYLFSPHLSHLKAWYKREVHMLLDMPSRTRKVKNLEKVYNEHLDSGTYSFAVYYKNWLTEGAEAPSVPSVTIPSISASESHHGSPLGQSSESASPVDSFSPQTMVSKKLYDSVFGGSSKAGIEEEKDNAIEDNLHNHMRHSCSSSIAEQKLAFVSEMVKYTEEDTQEDSKKMTLAIELHTKGTSLLYDLPHESTNEVTLSKATGSVLGMQDAKRHFGLIVSTGSLSSEESVSSCVVNPIETTSSPKGLYFPTIPQEFICPLTGTLFEEPTTLETGQTYERAAINAWFDKGNRTCPVSGNSLDCVAMPLTNLVLKRLIDNWKSEQINHILDFASQIADNESHKLKHDEAAIFNLESLFTSLNGSNKRNYVKQLISIGLLSFIFRRLELGNVEEKTRALALLLNCSEADSSCIYQIARNIDKKFLLELLCSNDVAPRTTAIPLLAELFSLKRNDAISFLSDFAGPDVLNTMNVLLLFLKNSSLHQQPLVAVLLLHFDLLDNLSPKTKPQTHSIYREEAVNVIAVALDASLHDDKVQEKCCKALLILKGLFATKGKKEAKTDILKQHEDENDSSEVNAYEHEEEGLISLEDEDEKDIVWLVNLLELLIGDGESPFLKNISRCLASRYLDLVKVCLLTVAWLGSRLSLLSNSSSPLPAFPAIIYQMKGILRSGDLELKTLASLSLFYFSKIPESKALLMTMAEDIVAPLHRLIDVTWTAKQLLVMLGEEL 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1626 1112 MobiDBLite consensus disorder prediction 455 486 - -
Acco13g1626 1112 MobiDBLite consensus disorder prediction 452 486 - -
Acco13g1626 1112 MobiDBLite consensus disorder prediction 73 118 - -
Acco13g1626 1112 Coils Coil 287 307 - -
Acco13g1626 1112 CDD RING-Ubox_PUB 640 699 IPR045210 -
Acco13g1626 1112 Coils Coil 947 967 - -
Acco13g1626 1112 MobiDBLite consensus disorder prediction 174 194 - -
Acco13g1626 1112 SMART Ubox_2 642 706 IPR003613 GO:0004842|GO:0016567
Acco13g1626 1112 SUPERFAMILY ARM repeat 728 931 IPR016024 -
Acco13g1626 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 713 IPR013083 -
Acco13g1626 1112 SUPERFAMILY RING/U-box 628 709 - -
Acco13g1626 1112 MobiDBLite consensus disorder prediction 86 118 - -
Acco13g1626 1112 PANTHER OS04G0584500 PROTEIN 633 1105 - -
Acco13g1626 1112 Pfam U-box domain 639 710 IPR003613 GO:0004842|GO:0016567
Acco13g1626 1112 ProSiteProfiles U-box domain profile. 638 713 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1626 Acco-ChrAcco13 20429379 20438720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1626 638 761 U-box Gene Family AT1G71020 32.031 3.83e-14 74.7