Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1602 ATGGATTGTTTGCGCGAGTCGATCGAGAAGGTACAGTCACGATTCGATTTCGAAGCTCCTGAACCGGCAGTTCGCCTAGCCCTGACGGAATGTCGGTTCGACGAGGATGCTGCGTTGGAGTTTCTCAACAACAATCCTGGGTTTCTGGCCCGGCCCGTCACGGTGGTTCGGGCCGTCACTAGCACTGGCTCAAGGGTTTTGGCACCGACGCCGGTAAAGCAAGAGGGGTTCGACGATTCTCATATGTCTGATGAAATTAGTCTGAAGAGCAATGTGAAAGAAGAACCCGTTGATTTGACGATTGAGGATCGAAACCCAGCGAATGTAGAAAATAGTTCCGGCAATTCTCATGAGGTGTCACAACCGATTGAGGAGTTTAATGTGAAGAAGGAATCGGAGGAAGATGATGTTTCTAGGTCATTGCCGTCCCAAACCCAAGCGCTGGAGTCTACTGGTAATCGGACATCTTCATGGGAAGCTGGATATGAAGAGTTCCTCAAGGCTTCAAATACAAAAGTTATTTCAAAGGAAGAATATCTGAAGTCCACGGTGGAACAACAGCCACCAGTTCAGGCTTCTGTTGATAAGGTCTTGGAGAGGAAACAGGTGGCTACTCCTGATAGCGGTGAAGTAAAAATCGTCAAAGAAGTTGATCTATTTCCATGTTTTCGGAAATCTTCACAGGTTAAAAATAAAAACGTTGAACTAGAACTTCCTAGACCTCCAAACGTGGAGGATGGGGAATTTCCAGAATATCCAGACTGGTTTTTAGCGGGACGGACAATAATTACTGCACTTTCAACTACTAAAGGGAGGAAATTAGTGGACAATGAGATTGTTCATTTCGATTTTCGGTCTGCATTTGCCAAACGCGACTCCAAATGGATTCTTCGCATTTCAACCAAGCGATCTGGAGAGGTTGGACGGGTTAATATGGAATGGGCTAATGAAGTTGTCCCACTTGTTCGTTCTGCAAAGGTCAAGATTATAGGCCGATGCGTAGCTGCACCACCTGTCTTACAAATGATGCAAGATATCATGTTGTGTGTAAGCTTTTACATCCACCAAAGCGTATACACTTCAGAAGTCAATACTTCATGGAGGCTTGATGGCTCTACTCACATTGATCCTTCTGTTTATCCTCTTCCCACGGTGATCAAATTGATAGAAATGAAGCCATATCAGAATGGTAATAAAGATGAAGCTGCGTCAGATTTGCCTATCTTGAAACGGAGAAAGGGTTGTTCTCCTGATCAAGATGACGAACAAGCTGTGCCACAGTCATCTTTGAATAAGCTTGTTGGAGCCGCTGAAGTCTACGATTTGGAGGAGATGGAAGGTCCAAGCACACTGATGTGTGTTCTAAAGCCTTACCAGAAACAAGCGTTGTATTGGATGTCAGAACTAGAAAAAGGAACTAATGCTCAGAATGCTGAAAATACTGTTCATCCTTGCTGGGCAGCCTATTGTATAAATGATGAGAGGGTTAACACTATTTATGTAAACAACTTCACTGGGGAAGCAACAACAAAGCTCCCACCTGCATTTCGATTGCCAAGAGGAGGGGTTCTCGCAGATGCTATGGGACTTGGGAAGACTGTCATGACTATTGCTCTAATCCTTGCAAGACAAGGGAGAGGGGATAATGTTGGTCTTTCAAAGAAGAGGAATCAAGTTGCTCATACTGACCCCACATTCAAAGTTGATGGTGGCACTCTTGTTGTTTGTCCCATGGCATTGCTAGGTCAATGGAAGGATGAGCTTGAAACCCATTCCGAGCTAGGAAGCATATCCATTTTTGTTCACTACGGTGGGGACAGAACCAATGATCCTCGGGTGATCTCAGGGCATGATGTTGTTTTAACAACTTATCGTGTCCTTGGAGATGCATATAAAACTTATAAAGAGAACAGCATCTACCATAAGGTCAACTGGCATAGGGTTGTCCTGGACGAAGCTCATTCCATTAAAGCCCATAAATCACATGCTGCACTAGCTGCTTTTACCCTGACCTCACACTGCCGTTGGTGTCTTACTGGAACGCCTCTACAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGCTTCTTGCATGTTGAACCATGGGGCAATTTTGCTTGGTTTAATAAATTGGTTCAACGGCCTTATGAGAATGGTGATCCTCGAGGCTTGAAATTAGTCAAGGCCATTTTGAAGCCATTGATGTTAAGAAGAACAAAGGAAACAAAGGATAAGTGCGGAAGGCCCATACTTGTTCTTCCACCGATTGACATTCAATTGATTGAGTGTGAACAGTCAGCAGCTGAAGCTGAATTGTATAATGCCCTCTTCAGAAAATCTAAACATCAATTCGACCAGTATGTTGGACAAGGAAAAGTTCTCAACAACTATGCTAACATTCTTGAGTTATTATTGCGGCTGAGACAATGTTGTAACCATCCATTTCTGATCACAAGCCGAAGTGACTCAAAGAAACCTGTGGACTTTGACATACTCGCGAAAAGACCACTCGAATTCAATGCCAATTCTACAAGTCAGTGTGCATATGCTACTGAGGCCATAGAGGCTCTTCGCAAGGGTGAAAAACTAGAATGCCCAATATGCTTAGAATCTGCAGATGATCCTGTGTTCACTCCATGCGCACACAGAATGTGCAGGGAGTGCTTGCTTTCTAGCTGGAGTACCCAAATCAGTGGTCCTTGCCCTCTCTGTCGTCATAAGATAAACATAACCAATCTAATCAATTGTCCATTTCAGAATCAGTTTGTGGTTTCTGATGTTGAGAAGGACTGGAAGGAGTCTACCAAGGTTTCAAAGCTTCTGGAAAACTTGGAACACGTTGAGAGATATCGCCCCGATGAAAAAAGCATTGTGTTCAGCCAGTGGACGGCCTTTTTGGACCTCCTGGAGATTGCTTTGAAGAAGAAAGGAATTGGGTATTTTAGATTTGATGGGAAACTGCAACAGAAGAATAGGGAAAGAGTTTTGAAGGAGTTTAATGAATCCAGAGGGGAAAGGGTTTTGTTGATGTCACTTAAAGCTGGCGGTGTAGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATGATGGATCCATGGTGGAATCCTGCGGTTGAAGAGCAAGCAACTATGAGAATCCATCGTATAGGACAAAAACGAACAGTTAAGGTTAGAAGATTCATTGTCAAGGATACGGTGGAAGAGAAGTTGCAACAAGTGCAGGCCAAGAAGCAGAAGATGATATCTGGAGCCCTCACAGAGGATGAGGTTCGGTCAGGTAGGATTGAAGACCTCATGATGCTGTTCAGTTGA 3312 0.4405 MDCLRESIEKVQSRFDFEAPEPAVRLALTECRFDEDAALEFLNNNPGFLARPVTVVRAVTSTGSRVLAPTPVKQEGFDDSHMSDEISLKSNVKEEPVDLTIEDRNPANVENSSGNSHEVSQPIEEFNVKKESEEDDVSRSLPSQTQALESTGNRTSSWEAGYEEFLKASNTKVISKEEYLKSTVEQQPPVQASVDKVLERKQVATPDSGEVKIVKEVDLFPCFRKSSQVKNKNVELELPRPPNVEDGEFPEYPDWFLAGRTIITALSTTKGRKLVDNEIVHFDFRSAFAKRDSKWILRISTKRSGEVGRVNMEWANEVVPLVRSAKVKIIGRCVAAPPVLQMMQDIMLCVSFYIHQSVYTSEVNTSWRLDGSTHIDPSVYPLPTVIKLIEMKPYQNGNKDEAASDLPILKRRKGCSPDQDDEQAVPQSSLNKLVGAAEVYDLEEMEGPSTLMCVLKPYQKQALYWMSELEKGTNAQNAENTVHPCWAAYCINDERVNTIYVNNFTGEATTKLPPAFRLPRGGVLADAMGLGKTVMTIALILARQGRGDNVGLSKKRNQVAHTDPTFKVDGGTLVVCPMALLGQWKDELETHSELGSISIFVHYGGDRTNDPRVISGHDVVLTTYRVLGDAYKTYKENSIYHKVNWHRVVLDEAHSIKAHKSHAALAAFTLTSHCRWCLTGTPLQNSLEDLFSLLCFLHVEPWGNFAWFNKLVQRPYENGDPRGLKLVKAILKPLMLRRTKETKDKCGRPILVLPPIDIQLIECEQSAAEAELYNALFRKSKHQFDQYVGQGKVLNNYANILELLLRLRQCCNHPFLITSRSDSKKPVDFDILAKRPLEFNANSTSQCAYATEAIEALRKGEKLECPICLESADDPVFTPCAHRMCRECLLSSWSTQISGPCPLCRHKINITNLINCPFQNQFVVSDVEKDWKESTKVSKLLENLEHVERYRPDEKSIVFSQWTAFLDLLEIALKKKGIGYFRFDGKLQQKNRERVLKEFNESRGERVLLMSLKAGGVGLNLTAASNVFMMDPWWNPAVEEQATMRIHRIGQKRTVKVRRFIVKDTVEEKLQQVQAKKQKMISGALTEDEVRSGRIEDLMMLFS 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1602 1103 Pfam SNF2-related domain 458 816 IPR000330 GO:0005524|GO:0140658
Acco13g1602 1103 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 939 1099 IPR001650 -
Acco13g1602 1103 CDD DEXDc_SHPRH-like 455 738 - -
Acco13g1602 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 858 913 IPR013083 -
Acco13g1602 1103 MobiDBLite consensus disorder prediction 123 138 - -
Acco13g1602 1103 ProSiteProfiles Zinc finger RING-type profile. 865 905 IPR001841 -
Acco13g1602 1103 Pfam Zinc finger, C3HC4 type (RING finger) 865 904 IPR018957 GO:0046872
Acco13g1602 1103 MobiDBLite consensus disorder prediction 90 155 - -
Acco13g1602 1103 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 513 700 IPR014001 -
Acco13g1602 1103 Pfam HIRAN domain 263 348 IPR014905 GO:0003676|GO:0008270|GO:0016818
Acco13g1602 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 738 IPR027417 -
Acco13g1602 1103 SMART HIRAN_2 256 354 IPR014905 GO:0003676|GO:0008270|GO:0016818
Acco13g1602 1103 MobiDBLite consensus disorder prediction 105 122 - -
Acco13g1602 1103 SMART ultradead3 451 713 IPR014001 -
Acco13g1602 1103 Gene3D - 754 1102 IPR027417 -
Acco13g1602 1103 ProSitePatterns Zinc finger RING-type signature. 880 889 IPR017907 -
Acco13g1602 1103 CDD RING-HC 863 904 - -
Acco13g1602 1103 CDD SF2_C_SNF 934 1061 - -
Acco13g1602 1103 SMART ring_2 865 904 IPR001841 -
Acco13g1602 1103 SUPERFAMILY RING/U-box 860 916 - -
Acco13g1602 1103 Gene3D - 510 739 IPR038718 -
Acco13g1602 1103 Pfam Helicase conserved C-terminal domain 937 1050 IPR001650 -
Acco13g1602 1103 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 248 1102 - -
Acco13g1602 1103 SMART helicmild6 967 1050 IPR001650 -
Acco13g1602 1103 MobiDBLite consensus disorder prediction 139 155 - -
Acco13g1602 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 1095 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1602 Acco-ChrAcco13 19528566 19535212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1602 92 1102 RAD5 or RAD16-like Gene Family AT5G43530 56.818 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco13g1602 SNF2_N 6.1e-80 CL0023