Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1568 ATGGCAAGTTTGAATCTGAAGGAGACAGAGCTGTGTCTGGGATTACCCGGCGGTGGCGGCGAGGTTGTGGAAACCGCTACTCCAAAGGCCTCATCAGGGAACAAGAGAGCCTTCTCTGCAACTGTTGACCTCAAGCTCAACCTCGTCGATGATTCCAAGGATGATACCTCCGGCGAAGGAGAAGATCTCATAAAAAATCACCAAGACCACAAGAATATCATCTCCTCCTCTAAGAAGGACCCGGCTAAGCCACCTGCCAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGGTCATACAGGAAGAACGTGATGACACAGAAGGTGAGCAGTGAGGAGGAGGGGAACACTGAGAAGAAGACCGTGGTGGCGACCGGCGGCAGCGGAGGATATGTGAAGGTGTGTATGGACGGAGCCCCCTATCTTCGGAAAGTGGACTTGAAGATGTACAAAGGCTACCAGCAACTTTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGAAAGTATGAGGGGGGCCATGAGCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTGCTGAACAGCTCTGAGTATATTCCAACCTATGAAGATAAGGATGGTGATTGGATGCTCGTTGGCGATGTCCCATGGCAGATGTTCGTTGATTCATGCAAGCGTCTCCGAATAATGAAAGGATCAGAAGCCATTGGATTGGCCCCAAGAGCCATGGAAAAATGCAAAAGCATCAGAACCTGA 753 0.5033 MASLNLKETELCLGLPGGGGEVVETATPKASSGNKRAFSATVDLKLNLVDDSKDDTSGEGEDLIKNHQDHKNIISSSKKDPAKPPAKAQVVGWPPVRSYRKNVMTQKVSSEEEGNTEKKTVVATGGSGGYVKVCMDGAPYLRKVDLKMYKGYQQLSDALAKMFSSFTMGKYEGGHEQGMIDFMNESKLMDLLNSSEYIPTYEDKDGDWMLVGDVPWQMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSIRT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1568 250 Pfam AUX/IAA family 8 240 IPR033389 -
Acco13g1568 250 SUPERFAMILY CAD & PB1 domains 127 230 - -
Acco13g1568 250 MobiDBLite consensus disorder prediction 49 90 - -
Acco13g1568 250 Gene3D - 124 243 - -
Acco13g1568 250 ProSiteProfiles PB1 domain profile. 128 231 IPR000270 GO:0005515
Acco13g1568 250 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 236 IPR003311 GO:0005634|GO:0006355
Acco13g1568 250 FunFam Auxin-responsive protein 123 241 - -
Acco13g1568 250 MobiDBLite consensus disorder prediction 49 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1568 Acco-ChrAcco13 17835394 17837583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1568 107 239 B3 DNA Binding Superfamily AT4G23980 29.710 9.31e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco13g1568 AUX_IAA 9.2e-84 CL0072