Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1545 ATGAATTCATCATTAGCTGGGAGAGGAGTTACATGGCATAAAGAAAAAGGTCAAGGCCCCTGCCTTTGTCCCGTGATACTGCTGTGGGTTGCTCCTTCCTTTTCGCTCTCTGCTCTCTCGTCAACCCACTCAGCCATGGAACCAGGCGCTCCTCCGCCGCCTCCGCCGTCACCTCCGGCCTCACCCTCTCCATCCTCCTCCGCCTTCACCATCCTCGGGAAGTATCAATTGATCCGTCTTTTAGGTCGTGGCAGCTTCGCCAAGGTGTATCAGGCTCGATCCCTAATTGACGGTTCCATCGTCGCCGTGAAGATCATCGACAAGTCCAAAACCGATCCCGCTATGGAGCCGAGGATTGTTCGTGAGGTCGATGCAATGCGACGGCTTCACGATCATCCTCATATTCTTAAAATCCATGAGGTTTTGGCTACGAAGACGAAGATCTACCTCATAGTGGAGTTCGCTGCCGGTGGGGAGTTGTTCTCGAAGATCGCTCGTAAAGGAAGGATGACGGAGCTGGTGGCAAGGCGGTACTTCCAGCAATTGGTCTCGGCCCTCTGTTTTTGCCATAAAAACGGCGTCGCTCACCGTGATGTGAAGCCTCAGAATCTCCTTTTGGATCAAGAAGGGAATCTGAAGGTGTCCGATTTTGGACTCTCCGCCCTACCGGAACAGCTTAAAAACGGGTTGCTCCACACGGCTTGTGGCACGCCGGCTTATACCGCGCCGGAGATCCTCTTCCGGCGCGGATACGACGGCTCAAAAGCCGACGCGTGGTCGTGCGGGCTTATACTCTACGTACTGCTCGCCGGCTACCTCCCTTTCTCCGATGCCAACATCCCTGAGATGTGCAAGAAGATCAGCCGGCGCGATTACAAGTTCCCGGACTGGATTCCCAAGCCGGCGCGGTTCGTGATTCACCGACTGCTTGACCCGAACCCCAAAAACCGGATGAGCCTAGAATCTCTATATCAAAACTCGTGGTTCAAGAAATCGCTGAAGCCCCAACCTGACGAGAGCTTATTCGAGTCGTGTCCCACTGCGAAATCGTATCAAAAGCTCGAAAGAATGGGGTCGGGCGTGAACGCCTTCGATATAATCTCGATGTCGTCAGGTCTGGACCTGACAGGGTTGTTCGAAACGACGATGGATAACAAGAGAGAGAAGATATTCACATCGAATGCTTCACTGGTAGCAGTGGAAGAGAAAGTGAAGGAAGTGGGAGGAATTTTAGGATTCAAAGTTGAAATCGGTAAAAATGGAGCAATTGGATTAGGGAAAGGGAAGGTGGTTCTTGTGGTGGACGTGTATGAGATAGTTCCTGAGTTGTTAATGGTGACTGTGAAAGTGACTAATGGTGGGTTTGAGTTCGATGAGCTTCACTGGGGAGACTGGAAATCTGGCCTTCAAGATGTTGTTCTTTCATGGCACAATGAACCACTGTAA 1446 0.5173 MNSSLAGRGVTWHKEKGQGPCLCPVILLWVAPSFSLSALSSTHSAMEPGAPPPPPPSPPASPSPSSSAFTILGKYQLIRLLGRGSFAKVYQARSLIDGSIVAVKIIDKSKTDPAMEPRIVREVDAMRRLHDHPHILKIHEVLATKTKIYLIVEFAAGGELFSKIARKGRMTELVARRYFQQLVSALCFCHKNGVAHRDVKPQNLLLDQEGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILFRRGYDGSKADAWSCGLILYVLLAGYLPFSDANIPEMCKKISRRDYKFPDWIPKPARFVIHRLLDPNPKNRMSLESLYQNSWFKKSLKPQPDESLFESCPTAKSYQKLERMGSGVNAFDIISMSSGLDLTGLFETTMDNKREKIFTSNASLVAVEEKVKEVGGILGFKVEIGKNGAIGLGKGKVVLVVDVYEIVPELLMVTVKVTNGGFEFDELHWGDWKSGLQDVVLSWHNEPL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1545 481 Pfam Protein kinase domain 75 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1545 481 Gene3D Kinase associated domain 1, KA1 358 474 - -
Acco13g1545 481 MobiDBLite consensus disorder prediction 47 63 - -
Acco13g1545 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Acco13g1545 481 Gene3D Transferase(Phosphotransferase) domain 1 157 349 - -
Acco13g1545 481 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 69 424 - -
Acco13g1545 481 FunFam Non-specific serine/threonine protein kinase 68 159 - -
Acco13g1545 481 ProSiteProfiles NAF domain profile. 356 380 IPR018451 GO:0007165
Acco13g1545 481 Gene3D Phosphorylase Kinase; domain 1 63 156 - -
Acco13g1545 481 CDD CIPK_C 362 470 - -
Acco13g1545 481 Pfam NAF domain 361 416 IPR004041 GO:0007165
Acco13g1545 481 SMART serkin_6 75 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1545 481 SUPERFAMILY Protein kinase-like (PK-like) 71 341 IPR011009 -
Acco13g1545 481 MobiDBLite consensus disorder prediction 42 66 - -
Acco13g1545 481 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Acco13g1545 481 ProSiteProfiles Protein kinase domain profile. 75 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1545 481 FunFam Non-specific serine/threonine protein kinase 65 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1545 Acco-ChrAcco13 16820226 16821800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1545 56 479 Miscellaneous Gene Families AT3G23000 57.044 4.36e-166 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Acco13g1545 Pkinase 9.8e-68 CL0016