Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1542 ATGATGGCAGGACTGGAACTCATACCAGTGGGTACAATTCTGGCTGTGCTTACCAGTCAGATTATAAAAACAGCTAATGCTGCATCTGAAGTTCTTGTTGAAAAAGAAACTTTCAAGGTTCTTTCAAAACACTTGTACGATATTGAACCGGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGAGTCTCAAGCTGCAAGAATTGCTCTGGAGTCTCTTGAAGAAGATGTGAAGAGGGCGAACAAAGTGGTTGAGAAGTACAGGAACCGTGGTCGTTTTTACTTGCTGGTTAATTGCAGGAGCATAGTTCATGAAGTTGAAGAAGTCACGAGAAGCATTGGAAAGTCCCTGGCTGTACTATCACTTGCAAATACTGAAGTTTTATCGGGAATTTCTGATCAGGTTGATAGATTACAAAATGAGATGCAAAGGGTGGAGTTCGAGGTGTCACATTCTCAACTCCAAATAGTGGAGAGGTTGGATCAGGGCCTTAGGGAGCAGAAACTAGACCAGGCTTTTGCAAATGACATGCTTGAAGAAATCGCAAGAGCAGTTGGAGTGCCGGTAGATCCTTCAGAGATAGGAAAAGAGCTGGCCAGCATTAGGAAAGAAAAAGAAGAAGCTGCTGACAGGAAAGAAAGAGCCGAGGTCTTCTTCTTGGAGCAGGTCATTGAATTACTATCCCGAGCTGATGCTGCAAGAGATTATGAGGAAGTTAAGAAACAATACTATGAAAGAGTTCAGGTGATAGAAAGATACAATTCAAGGGAGAAATATATAGACCCGCTTAATTCTTTCATTTGTTGCATAACCGGGACCGTTATGGCAGATCCCGTAAGCCTTTGCACTGGTACTACTTGTGAGAGATATGCCATTGAGGCTTGGTTTGACTCTGGTAAGAGGACTGACCCTGAAACTAAAGAAGCACTCGAAGATACTAAGTTGAGATCTAATGTTCCACTTAGACAATCCATAGAGGAATGGAGAGAACTTAATTACTGCCTTACAATCAGGTCTATCAGGGAAAACCTTTCATCAGATTCCAACTTCTCTGTGCTAGAATCCTTGAGAAAAGTGCAGGATCTCATAAGAGACAATTCTATAAACAAGGATTGGATTTCTATAGGAGGGCTTACCGACATTATTATCTCTATCCTTGGGAAAACTGTTGATGGAGAAGTGAAGATCAACATTTTGAGTACTTTGAATGATGCAGTAGAAGGGCACATGAGAAACAAGGAAAAAGTATCAGAATCTCAAGGATGGGATCACATTATTTGCTGCTTGGGCAGTGACCCCAGAACTTCAAAAGCTGCAATTAACTTGCTGTATGAGTTGCTGCAAGATCGAACAGGTTGGAATGTGTCTCTCTGCAGAAAACTCTCTCAGCATGACAGTGCAATTTCTTTCCTCCTTACCCTTCGTAAGGGTCCAGAAGAGGAGTCAGCGGAGATTGCAGAAAAGATTTTGATGGAGCTTTTTCGCATAGATGAGGTCAACATTTCTAGTGCTGCCAAGTTTGGCTGGTATAAACCACTTGTTGATCTTATGGTTCAAGGAGTAGAATCTTCAAGGATATCAATGGCAAAAACCATTGTGAATATGGAGTTGAGTGATTCAAATTTGAACCTCCTTGGTGAAGGAGTTATACCTCCTTTGCTTGAAATGCTGTCTGGCAATATTGAATTAAAAGAAGCCTCGTTATCTGCGCTGGTTAAACTGTCAGATTCCCGTGCCAATAAAAGGATTATAGCTGCATTGGGGGGAGTTCCTATCATTCTAGAACAAATTTTCTCTCCTTCCATGCGAACCCTGATTGCCATCAAATGCTCTGAAATCCTGGAGAAACTTTCTGCTGATGAAGATGGAATTGATTTCTTTGTTGACAGAGAAGGGAAACAACTTGAGTTAGATTCCATTATCATCAAATTACTTGCCCTTCAGCAGAGTCCCACCTTAGCCTACAATATCCACAAGCCTTCTTTGCGTGCACTTCTTGGAATTTGCAAGTTTGAGACTGGTTTAGTCAAGAAGGCTGTCCTGGCTGCCAGGGGTGTATCTCTAATCCTCCCCCTTCTTGATGACTCCGATTCAGAAATCAGAGAGACCGCCATAAACCTTCTCTTTCTTTTCTCCCAACATGAGCCAGAGGGAGTGGTTGAATACCTCTTCAGGCCAAGGAGGCTGGAGGCTTTGGTGGGATTTCTAGAGACTGATGATAATGATGTTCAGATGGCTGCTGCTGGTTTAATAGCAAACCTACCGAAATCCGAAAAAGAGCTCACTATGAAGCTGATTGAATTGGGTGGACTTGATGCAATCATATGCATTTTGAAAACTGGAACAATGGAAGCTAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTTACTGATCCCACAAACATTGAGTCGCAGCGCGATTTGGTTAAGCGTGGGATATATCCTCTGCTCGTGAACTTTCTCAACACTGGTTCAATAACAGCGAAGGCTAGAGCAGCAGCCTTCATCGGAGATCTTTCAACAACCACTCCGATGCTCACGCTCACAGCCAAATCAACTGGCTGCTGGTGTTTTAGATCATCAAGAGCTCATTTATGCCCAGCACATGGTAGTGTATGCAGTGTGAGCAACACATTTTGTCTCTTGGAAGCACAAGCTTTGCCTGGTTTAGTAAGTCTCTTATGTGGGGAGGTTGATGTAACTGCTTATGAAGCAATACAGACACTTTCAACATTGGTTTTGGAAGATTATCCTCAAAGGGGAGCTCATGTTTTGAATGAAACCAATGCTATAAAACCCCTTATGGATATTCTGACATGGGGTTCTGATTCTCTTAAGGCTGAGGCTCTAGGACTCTTGGAGAAGGTTTTTATATCAAAAGAAATGGTGGAATTGCACGGCGCAACAGCTAGATCTTGTTTGGTTGGTTTAACGGGGATGAATATATATGGAGATGGCCATCTCAGAAGAAAAGCTGCTAAGGTATTGTCATTGATCGAACGGTATTCAAGGTCGTCATCTGCTGCTGTTTCTGGAGTTCTGGAGTGA 3048 0.4242 MMAGLELIPVGTILAVLTSQIIKTANAASEVLVEKETFKVLSKHLYDIEPVLKELQLQELNESQAARIALESLEEDVKRANKVVEKYRNRGRFYLLVNCRSIVHEVEEVTRSIGKSLAVLSLANTEVLSGISDQVDRLQNEMQRVEFEVSHSQLQIVERLDQGLREQKLDQAFANDMLEEIARAVGVPVDPSEIGKELASIRKEKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYYERVQVIERYNSREKYIDPLNSFICCITGTVMADPVSLCTGTTCERYAIEAWFDSGKRTDPETKEALEDTKLRSNVPLRQSIEEWRELNYCLTIRSIRENLSSDSNFSVLESLRKVQDLIRDNSINKDWISIGGLTDIIISILGKTVDGEVKINILSTLNDAVEGHMRNKEKVSESQGWDHIICCLGSDPRTSKAAINLLYELLQDRTGWNVSLCRKLSQHDSAISFLLTLRKGPEEESAEIAEKILMELFRIDEVNISSAAKFGWYKPLVDLMVQGVESSRISMAKTIVNMELSDSNLNLLGEGVIPPLLEMLSGNIELKEASLSALVKLSDSRANKRIIAALGGVPIILEQIFSPSMRTLIAIKCSEILEKLSADEDGIDFFVDREGKQLELDSIIIKLLALQQSPTLAYNIHKPSLRALLGICKFETGLVKKAVLAARGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLETDDNDVQMAAAGLIANLPKSEKELTMKLIELGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSITAKARAAAFIGDLSTTTPMLTLTAKSTGCWCFRSSRAHLCPAHGSVCSVSNTFCLLEAQALPGLVSLLCGEVDVTAYEAIQTLSTLVLEDYPQRGAHVLNETNAIKPLMDILTWGSDSLKAEALGLLEKVFISKEMVELHGATARSCLVGLTGMNIYGDGHLRRKAAKVLSLIERYSRSSSAAVSGVLE 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1542 1015 Gene3D - 337 539 IPR011989 -
Acco13g1542 1015 Coils Coil 128 155 - -
Acco13g1542 1015 SUPERFAMILY ARM repeat 662 1000 IPR016024 -
Acco13g1542 1015 Coils Coil 63 90 - -
Acco13g1542 1015 Gene3D - 8 124 IPR036537 GO:0007166
Acco13g1542 1015 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 589 IPR000225 GO:0005515
Acco13g1542 1015 SUPERFAMILY ARM repeat 465 721 IPR016024 -
Acco13g1542 1015 CDD RING-Ubox_PUB 266 315 IPR045210 -
Acco13g1542 1015 Gene3D - 859 1009 IPR011989 -
Acco13g1542 1015 Gene3D - 540 855 IPR011989 -
Acco13g1542 1015 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1007 - -
Acco13g1542 1015 SMART arm_5 409 448 IPR000225 GO:0005515
Acco13g1542 1015 SMART arm_5 758 798 IPR000225 GO:0005515
Acco13g1542 1015 SMART arm_5 715 756 IPR000225 GO:0005515
Acco13g1542 1015 SMART arm_5 918 958 IPR000225 GO:0005515
Acco13g1542 1015 SMART arm_5 874 914 IPR000225 GO:0005515
Acco13g1542 1015 SMART arm_5 673 713 IPR000225 GO:0005515
Acco13g1542 1015 SMART arm_5 801 841 IPR000225 GO:0005515
Acco13g1542 1015 SMART arm_5 538 576 IPR000225 GO:0005515
Acco13g1542 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 336 IPR013083 -
Acco13g1542 1015 SUPERFAMILY RING/U-box 248 331 - -
Acco13g1542 1015 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Acco13g1542 1015 Pfam U-box domain 265 330 IPR003613 GO:0004842|GO:0016567
Acco13g1542 1015 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Acco13g1542 1015 CDD MLKL_NTD 11 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1542 Acco-ChrAcco13 16700152 16703961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1542 265 970 U-box Gene Family AT1G76390 26.913 6.87e-41 160