Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1494 ATGGATTCTACTTGTTCCTCTCCGACGAAACCAACCAGAAAGCCGGGCAAAGGTAGAAGAAAGATCGAGATGAAGAAGGTTGAGCAATCCAGCAAGCGTCTCGTCACCTTCTCCAAACGCAAGTTAGGGCTTTTCCGAAAAGCTGCTGAGCTTTCGCTGCTGTGTGAGTCTGAGATCGCTGCAGTCGTCTTTTCTCAGCAGGGTAAGGTGTTCTCCTGCGGCTACCCTAACCCTGACTCCGTCATCCAACGCTACCTCTCCTCCGACAGTTCCTCTTCCTCCTCCTCGGAACCTGCTGCTGGAGAATCATCTGGGGTGTCGTCACTGAGGCGGGAATACGAGGAGGCGATGAAGGTTTTGGACGACGAGAAGAAGTCTCTGAACGCCGTGGCTGAGGTTACTGCTGGGTCGGGTTCTGAAGATGGGTCATGGTGGAACCGCGTAGTTGGGGAGATGGGTTTGGAGGAAGTCCAGGAGTTCAAGGAACGGCTTCAACAGTTAAGGCACAATCTGGTTGCCGCAGCAGAGGAGAAGAAGAAGGAGAAGATGACTGCTACTATGACTTCTTCGGTGGTGACTTTGCCGCCGCCTACGCAGGAGGAGGAAAGTTTGTTCATGTCTATGTTGAACGATGATTTGGGTATGGCTAAGAATGATGAAACGTGGGATTGGGGTTGGGATTCATGGATTGACACTACAAGCTGGACTGAATCTTCTTCTCTGGTTTGGAATAGTGATGCCGGCCACTCTTATATTAACGACAAGGGTTTATGA 774 0.5103 MDSTCSSPTKPTRKPGKGRRKIEMKKVEQSSKRLVTFSKRKLGLFRKAAELSLLCESEIAAVVFSQQGKVFSCGYPNPDSVIQRYLSSDSSSSSSSEPAAGESSGVSSLRREYEEAMKVLDDEKKSLNAVAEVTAGSGSEDGSWWNRVVGEMGLEEVQEFKERLQQLRHNLVAAAEEKKKEKMTATMTSSVVTLPPPTQEEESLFMSMLNDDLGMAKNDETWDWGWDSWIDTTSWTESSSLVWNSDAGHSYINDKGL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1494 257 Coils Coil 157 184 - -
Acco13g1494 257 MobiDBLite consensus disorder prediction 86 109 - -
Acco13g1494 257 MobiDBLite consensus disorder prediction 86 103 - -
Acco13g1494 257 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Acco13g1494 257 MobiDBLite consensus disorder prediction 1 27 - -
Acco13g1494 257 PANTHER MADS BOX PROTEIN 19 171 - -
Acco13g1494 257 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Acco13g1494 257 Coils Coil 106 130 - -
Acco13g1494 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Acco13g1494 257 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Acco13g1494 257 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Acco13g1494 257 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Acco13g1494 257 Gene3D - 30 104 IPR036879 GO:0003677|GO:0046983
Acco13g1494 257 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1494 Acco-ChrAcco13 15407312 15408085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1494 18 196 Type I MADS-box Gene Family AT2G24840 36.264 2.58e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco13g1494 SRF-TF 1.9e-18 No_clan