LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g1486	ATGATTTCGGATTTCCTGTTTCTTCTGTGCATTTGTGGGTTTTCCTCGTGCTGCTTCTTTATCATTCTAGATTCTGATCGTGCTCTCAAGGGTTTTGTAGCCGGAGAGGGAGGTGTTGGAACACCGAAGATGGATTTGGAAGCAGGGGCTCTGGATTCCAATATGAAGGGTGTTGGGAACATTAGCAGTAATGATAAAATTTTCAGAGCCGATAAGATTGATCTCCAACGTTTGGATGTGCAGCTTGAAAAGCACTTGAGCAGGGTTTGGTCCAGGAACATTGAGTCCAAAAGGCCTAAAGAAGAATGGGAGATTGATTTGGCCAAATTGAATCTCCGATACGTTGTAGCTCACGGGACCTATGGTACTGTTTATAGAGGCACCTATGATAACCAAGATATTGCAGTGAAAGTTTTGGACTGGGGTGAGGATGGTTTCGCCACTGCTGCTGAAACTGCTACTTTACGTGCATCATTTCAGCAGGAGGTTGCTGTTTGGCACAAACTTGACCATCCAAATGTTACAAAATTTGTTGGAGCTTCAATGGGAACCTTAAATCTTAAAATTCCCACAAAAAACTCTGATGGCCACGAGTCCCTTCCTTCTAGGGCTTGTTGTGTTGTTGTTGAGTATATCCCTTGTGGGACACTTAAACAATTATTGTTCAAACATAGGAATAAGAAACTTGCTTTCAAGGTTGTGACCAAGCTGGCTTTGGATCTCGCAAAGGGTCTCAGCTATCTACATTCAAAGAAGATTGTACATCGTGATGTCAAAGCAGAGAATATGTTGCTAGATCGTGGTGGAAACTTGAAAATAGCCGATTTTGGAGTCGCACGAGTTGAAGCACAAAATCCAAGTGACATGACTGGTGAAACCGGAACCCTTGGATATATGGCACCAGAGGTTTTGGATGGTAAGCCTTACAACAGAAGATGTGACGTGTACAGCTTTGGCATTTGTTTGTGGGAAATATATTGTTGTGATATCCCTTATCCAGATCTTAGCTTTGCTGAGGTGTCATTGGCAGTTGTCCGCCAGAATTTGCGGCCAGAAATCCCACGATGTTGTCCGACATCTTTGGCTAATATCATGAGGAAATGTTGGGATGGGAACCCAGACAAGCGTCCAGAAATGAGCGAGGTGGTGAGTTTTCTGGAAGCCATTGATACAAGCAAAGGAGGTGGAATGATACCAGAAGATGCCACACCCAAGTGCTTCTGTTTTGCCCCATCTCGTGGTCCCTAA	1248	0.4399	MISDFLFLLCICGFSSCCFFIILDSDRALKGFVAGEGGVGTPKMDLEAGALDSNMKGVGNISSNDKIFRADKIDLQRLDVQLEKHLSRVWSRNIESKRPKEEWEIDLAKLNLRYVVAHGTYGTVYRGTYDNQDIAVKVLDWGEDGFATAAETATLRASFQQEVAVWHKLDHPNVTKFVGASMGTLNLKIPTKNSDGHESLPSRACCVVVEYIPCGTLKQLLFKHRNKKLAFKVVTKLALDLAKGLSYLHSKKIVHRDVKAENMLLDRGGNLKIADFGVARVEAQNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDIPYPDLSFAEVSLAVVRQNLRPEIPRCCPTSLANIMRKCWDGNPDKRPEMSEVVSFLEAIDTSKGGGMIPEDATPKCFCFAPSRGP	415

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g1486	415	SUPERFAMILY	Protein kinase-like (PK-like)	91	386	IPR011009	-
	Acco13g1486	415	CDD	STKc_MAP3K-like	116	386	-	-
	Acco13g1486	415	Gene3D	Phosphorylase Kinase; domain 1	99	193	-	-
	Acco13g1486	415	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	92	389	-	-
	Acco13g1486	415	SMART	serkin_6	110	386	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g1486	415	PRINTS	Tyrosine kinase catalytic domain signature	209	222	IPR001245	GO:0004672\|GO:0006468
	Acco13g1486	415	PRINTS	Tyrosine kinase catalytic domain signature	313	335	IPR001245	GO:0004672\|GO:0006468
	Acco13g1486	415	PRINTS	Tyrosine kinase catalytic domain signature	357	379	IPR001245	GO:0004672\|GO:0006468
	Acco13g1486	415	PRINTS	Tyrosine kinase catalytic domain signature	247	265	IPR001245	GO:0004672\|GO:0006468
	Acco13g1486	415	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g1486	Acco-ChrAcco13	15296463	15300813	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g1486	54	415	MAP Kinase Kinase Kinase	AT3G22750	77.686	0.0	601

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Acco13g1486		PK_Tyr_Ser-Thr	4.5e-59	CL0016

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