Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1424 ATGGAACCTCAGAGACGCCTAGATCAAGGCTTCTCTGAGAGGAAAGGACAAAAACGGAAGCTGGAGGAGGAATTGGAAGAGGACTCTGAGATCTCGGCTTGGCCGCCCACCGGCTACGTCCGTGAGGCGCTGCTCGCCGAGGTGAAGTCTCAGGTTGACGTGCTTGAATCCACTTTCTCATGTAAGGAATCCGATCGAGCTGCAGCTAAGCGCGCCACTCACGTTCTCGCTGACCTTGCCAAAAATGAAGAAGTAGTGAACGTGATTGTTGAAGGAGGTGCAATTCCGGCTTTGGTTAAGCATCTTCAAGCGCCTCCTTCGAGTGAAGACGATCCTGCTCCAAAGCCATTTGAGCACGAGGTTGAGAAAGGGAGTGCTTTTGCTCTGGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAATGGTGCCTTAAAACATCTTGTTGATTTGTTGAAGAGGCATAATAGTAGCCCTACTTCTCGTGCTGTGAATAGTGTCATTCGCAGGGCTGCCGATGCGGTCACTAATCTTGCTCATGAAAACAGTAACATCAAAACCTGTGTCAGGATGGAAGGTGGGATTCCACCACTTGTTGCGTTGCTTGGATTCACTGATACAAAGGTTCAAAGAGCAGCTGCTGGTGCACTGCGTACCCTAGCTTTCAAAAATGGTGAAAATAAAAATCAGATTGTCCAATGGAATGCTCTTCCAACTCTGATTCTAATGCTCCGTTCTGAAGATCCTGCCATTTATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTGCACTCTTCTCCTAATATAAAGAAAGAAGTTATTCAAGCTGGAGCTTTGCAACCTGTAGTTGGATTGCTTCGCTCTTGCTGCTCTGAGAGCCAAAGGGAAGCAGCATTGTTGCTTGGACAGTTTGCAGCTACTGATTCTGACTGTAAGCTTCATATTGTTCAGAGAGGTGCTGTTCCGCCTCTGATAGAGATGCTTCAATCCGATGATGTACAACTCAAAGAAATGTCTGCCTTTGCCTTGGGGCGATTGGCACAGGACATGCATAATCAAGCTGGTATTGCATACAATGGTGGCTTAGAGCCATTACTTAAGCTTCTTGATTCAAAAAATGGGTCTTTGCAACATAATGTAGCTTTTGCACTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTTGGTGGTGTTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAGGCGACAAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAAAAGATTCATGGCCGTGCCCTGAATCATTTGTTATATCTTATGCGAGTTTCAGACAAGGCTGTCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTGTGTGGGTCATCAGAGATTAATATTCATTGATAACAATGGTTTGGAGTTGCTTATTGGGCTTCTTGGCTCTTCTAGCACAAAGCAGCAACTTGATGGTGCTGTAGCATTATGCAAGTTGGCCAAGAAAGTCATGACTCTATCTCCTATAGATGCTGCTCCCCCATCTCCAACACCTCAGGTCTATTTGGGGGAGCTGTATATTAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGGAAGCGGTTTTATGCTCACAGAATCTGCCTACTTGCATCTTCAGATGCATTTCGTGCAATGCTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGATATTGAAATCCCAAATATAAGATGGGAGGTTTTTGAACTAATGATGAGATTCATCTATACTGGATCAGTTGATGTTACTCAGGACATTGCTCAAGATCTCCTTCGAGCAGCTGATCAATATCTCCTAGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCGCAGGATATATCACTTGATAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTTAATGCAATATCGTTGAGGCACTCCTGCATCGTTTATATTCTAGAGCAGTATGATAAACTGTGTTCCAAGCCAGGGCACACTCACATGATTCAACGTATAATGCCAGAAATACGCAACTACTTTACACAAGTACTTACAAAGGCTAACTCTGTTACTGTTATTGCTCGGTCGTGCCAACCATTTTATTGTTGA 2145 0.4406 MEPQRRLDQGFSERKGQKRKLEEELEEDSEISAWPPTGYVREALLAEVKSQVDVLESTFSCKESDRAAAKRATHVLADLAKNEEVVNVIVEGGAIPALVKHLQAPPSSEDDPAPKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHNSSPTSRAVNSVIRRAADAVTNLAHENSNIKTCVRMEGGIPPLVALLGFTDTKVQRAAAGALRTLAFKNGENKNQIVQWNALPTLILMLRSEDPAIYYEAVGVIGNLVHSSPNIKKEVIQAGALQPVVGLLRSCCSESQREAALLLGQFAATDSDCKLHIVQRGAVPPLIEMLQSDDVQLKEMSAFALGRLAQDMHNQAGIAYNGGLEPLLKLLDSKNGSLQHNVAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRALNHLLYLMRVSDKAVQRRVALALAHLCCVGHQRLIFIDNNGLELLIGLLGSSSTKQQLDGAVALCKLAKKVMTLSPIDAAPPSPTPQVYLGELYINNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMLDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTQDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLDNVSSMYELSEAFNAISLRHSCIVYILEQYDKLCSKPGHTHMIQRIMPEIRNYFTQVLTKANSVTVIARSCQPFYC 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1424 714 SMART BTB_4 539 636 IPR000210 GO:0005515
Acco13g1424 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Acco13g1424 714 Gene3D Potassium Channel Kv1.1; Chain A 517 665 IPR011333 -
Acco13g1424 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Acco13g1424 714 SUPERFAMILY ARM repeat 437 507 IPR016024 -
Acco13g1424 714 Pfam Armadillo/beta-catenin-like repeat 189 224 IPR000225 GO:0005515
Acco13g1424 714 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Acco13g1424 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Acco13g1424 714 SUPERFAMILY POZ domain 532 633 IPR011333 -
Acco13g1424 714 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 700 IPR044282 -
Acco13g1424 714 MobiDBLite consensus disorder prediction 1 26 - -
Acco13g1424 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Acco13g1424 714 MobiDBLite consensus disorder prediction 1 31 - -
Acco13g1424 714 Gene3D - 61 233 IPR011989 -
Acco13g1424 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Acco13g1424 714 Gene3D - 234 514 IPR011989 -
Acco13g1424 714 CDD BTB_POZ_ARIA_plant 526 641 - -
Acco13g1424 714 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Acco13g1424 714 SMART arm_5 135 183 IPR000225 GO:0005515
Acco13g1424 714 SMART arm_5 466 507 IPR000225 GO:0005515
Acco13g1424 714 SMART arm_5 311 351 IPR000225 GO:0005515
Acco13g1424 714 SMART arm_5 227 267 IPR000225 GO:0005515
Acco13g1424 714 SMART arm_5 269 309 IPR000225 GO:0005515
Acco13g1424 714 SMART arm_5 82 134 IPR000225 GO:0005515
Acco13g1424 714 SMART arm_5 185 225 IPR000225 GO:0005515
Acco13g1424 714 SMART arm_5 352 392 IPR000225 GO:0005515
Acco13g1424 714 SUPERFAMILY ARM repeat 60 410 IPR016024 -
Acco13g1424 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Acco13g1424 714 Pfam BTB/POZ domain 534 634 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1424 Acco-ChrAcco13 14259607 14267237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1424 238 507 U-box Gene Family AT3G46510 24.373 5.94e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco13g1424 BTB 2.2e-25 CL0033