Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1410 ATGATCCCTTCATCAAGACATCTTCTTTTGGAACTATATTCAACCCTTTGGTTTCGTGATTGTCGTCGACGAGCCCACAATTCGGGTTCTAGGGTACAGTGCAGTGAAAAAGCGCATGATTTTCTGGGTCTTGATGCGCCACGGTCAGTTCCGAGTTTGGAGAAGTCTGAAACTCTCGAGATTGGGTCCGACGTTCGGAATTTCTTGATCCCATTTAGTGTGCTTCTGCTGGAAAATGCATTTGAGGCTCCAGAAATGTCACAGATGAACCCTATTTTGGTTCGTTCTAAGAATTCTGGGAAGCATTTCTATGCGATTCTGCATAAGATTGATGTCGGAGTTGTGATTGATTTCGAACCTGCCCCAACAGAGGATCCTGAGTTATCCATTTCTAGGTCGATGCAATCTCAGAAGCTAGCGGGGCGTCCGATTATGCGGTTAAAATCGTTTCCAGGTGGGGATATTGAGCATAACTGTGATGTTCTAGTTGAAAGTGTTGGAGAAATGACCGGCTATGATAGGTTAATGGTTTATAAATTTCTTGAAGATGAGAACGGTGAGGTTGTTTTTGCAGACAGTAAGAGGCCAGACTTAGAGCCTTATATTGGTTTGCACCATCCTGCTTCTGATATTCTTCAGGATTTGAAGTTGTTGTTAAAGCAGAATCGAATTAGCATGATTGTGGATTGCCAAGAAACTCCTGTTCATGTGATTCAAGATGAAGGTCTCTTGCAGCCTTTGCGCTTAATTGAATCAGCCCTTCTTGCTCCAAATGACTGGCATGCCAAGTACATGGCCAATATGAGATCAACTGGTTCATTAGTTATGGCAGTAGTAATAATTGGGAATGATGAAGAAGTTTCTACTAATTTTACCTCAATGATGAGACAACGGGGCCTAGTTGTTTGCCATCACACTTTGGAATCAGTATTATTGGAGAAACAAGTTCTGAGGACCCAAACTGTCTTGTACGATATGCTGCTTAGGGACTCTCCAATTGGTATTGTTACTCAATGTCCAAGTTATCCTGGAGCTGTCTCTCTTGGTGATTCAATCAAACGGGATGGTGCAGAGGATTTGGAAATGAATGCAGTTCACTCTTTTCAGCTTATCCAACAAGAGTCAATGAAGGATGTTGAGCTTGAGCATAGCAATTGTAAGTCTTTTGGTGTGGATGATCTGATTTGGATGGTCAAAGAAACGGTTAGATTGATAGAAACTGCCATTGCTCCCATATTTTCTGTGGATATTTGTGCACAAGTAAGTGGGTGGAATGCTAAGGTTGGGGAATTGACTGGACTTTCAGTTGAGGAAGCTGTGTCCAATGCCCTTCTCTTATGGTTGCAATCAATTTTAGTAGAACATTCAATGGAAAAGCTTACGGGTTGGGTTCATGGGTATGTCATTGGGAAATTGTTGGTGGGAGAGGTCTTCGGTGATTGTTGTAAACTGAAGGGTTTGAAAGCTCTAGCCAAGTTCTTGATTGTCTTGTACAATGCATGTGGCGGACAGGACACAGAAAAATTCCCATTTTCATTCCTTGACAGACACGGAAACTTTGTGCAAGCTCTTTTTACTGCACACAAGAGGGTTAACTCAGATGGCCAGGTCATTCGAGTTTTCTTCTTCTTGCAAACTGCAAGTCTTGAACTTCAACAGGCTCTGGATGTCCAGAGTAAAATGGAGAAGAATTGCCTTGCTGCCATGAAAGAATTAGCTTACGTTCGTCAACAAATAAAAAATACTTTGAGTGGAATACGCTTTACTAACTTGCTTTTGAAGGGTACAGAACTGACTGATGATCAAAATCAGTTTTTTGAGACTGCTGATGCTTGTGAGAAGCAGATTTTCAGGATAATACATGATGTGGACTCGGAGAGAATTGAGCACAGGTGA 1896 0.4193 MIPSSRHLLLELYSTLWFRDCRRRAHNSGSRVQCSEKAHDFLGLDAPRSVPSLEKSETLEIGSDVRNFLIPFSVLLLENAFEAPEMSQMNPILVRSKNSGKHFYAILHKIDVGVVIDFEPAPTEDPELSISRSMQSQKLAGRPIMRLKSFPGGDIEHNCDVLVESVGEMTGYDRLMVYKFLEDENGEVVFADSKRPDLEPYIGLHHPASDILQDLKLLLKQNRISMIVDCQETPVHVIQDEGLLQPLRLIESALLAPNDWHAKYMANMRSTGSLVMAVVIIGNDEEVSTNFTSMMRQRGLVVCHHTLESVLLEKQVLRTQTVLYDMLLRDSPIGIVTQCPSYPGAVSLGDSIKRDGAEDLEMNAVHSFQLIQQESMKDVELEHSNCKSFGVDDLIWMVKETVRLIETAIAPIFSVDICAQVSGWNAKVGELTGLSVEEAVSNALLLWLQSILVEHSMEKLTGWVHGYVIGKLLVGEVFGDCCKLKGLKALAKFLIVLYNACGGQDTEKFPFSFLDRHGNFVQALFTAHKRVNSDGQVIRVFFFLQTASLELQQALDVQSKMEKNCLAAMKELAYVRQQIKNTLSGIRFTNLLLKGTELTDDQNQFFETADACEKQIFRIIHDVDSERIEHR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1410 631 SUPERFAMILY PYP-like sensor domain (PAS domain) 30 124 IPR035965 -
Acco13g1410 631 SMART HisKA_10 568 631 IPR003661 GO:0000155|GO:0007165
Acco13g1410 631 Gene3D - 128 309 IPR029016 -
Acco13g1410 631 ProSiteProfiles PAS repeat profile. 397 446 IPR000014 -
Acco13g1410 631 PRINTS Phytochrome signature 255 276 IPR001294 GO:0006355|GO:0009584
Acco13g1410 631 PRINTS Phytochrome signature 69 91 IPR001294 GO:0006355|GO:0009584
Acco13g1410 631 PRINTS Phytochrome signature 169 188 IPR001294 GO:0006355|GO:0009584
Acco13g1410 631 Pfam PAS fold 453 545 IPR013767 GO:0006355
Acco13g1410 631 Pfam PAS fold 401 444 IPR013767 GO:0006355
Acco13g1410 631 Pfam PAS fold 32 121 IPR013654 GO:0006355
Acco13g1410 631 Gene3D PAS domain 31 127 - -
Acco13g1410 631 Pfam GAF domain 154 306 IPR003018 GO:0005515
Acco13g1410 631 PANTHER TWO-COMPONENT HISTIDINE KINASE 69 623 - -
Acco13g1410 631 CDD HisKA 572 623 IPR003661 GO:0000155|GO:0007165
Acco13g1410 631 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 154 306 IPR016132 -
Acco13g1410 631 SUPERFAMILY GAF domain-like 152 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1410 Acco-ChrAcco13 14052928 14063137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1410 456 629 Histidine Kinase Gene Family AT2G18790 61.494 6.82e-62 221