Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1383 ATGATCGGATTCACTCTGTTCGCCAAGCTGGATAGGCACAGAGGAGACCGCTATGGCAACAACTACGATTCTCACCCATATCGTCACTCCAGAGCTCCGTCACGCTTCTCCGACGCTCCCTTCAACAACCGCGGTGGTGGAGCCTCTCACCACCGTCAGTTTGACAGCCCACCTCGTCGCTCCCCTGGAAGAGGTTCAGGGTTCCGATCACCGGGTTTTGGCAGCAGCGATGGGTTTAGGCCAGTGAGTGGTGAAGGTCCTGGAGGGTTTGGGTTTAACGGTCGTCAGGGGCAGCCACTGTCTGGTCAGAAACGAGGGTTTCCCTTCTCTGGACGTGGAGGTTCGCCGGACCGTTTTGGTGGGGAAAGTTTTGCCAAACTTTTTGTTGGATCTGTTCCACGGACAGCAACTGAAGAAGATATTCGGCCTTTGTTCGAGCAACATGGAAATGTGGTTGAGGTTGCCTTGATAAAGGATAGAAAGACAGGACTGCAGCAAGGTTGTTGTTTCATCAAGTATGCTTCCCCTGATGAAGCTGATCAGGCAATTAAAGCATTGCACAATCAACATATTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGAGATATGCTGATGGTGAACGAGAACGCCTTGGTGCAGTTGAATACAAGTTATTTGTGGGCTCTCTGAATAAACAGGCTTCTGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGACGGGTTGAAGATGTTTATCTGATGCGTGATGAGAAGCAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCTCACAGAGATATGGCTTTGTCAGCTATAAATGCACTTAATGGAATTTATACAATGAGAGGTTGTGATCAACCTTTAACTGTACGATTTGCTGATCCTAAGAGACCTCGACAAGGGGATTCAAGGGGTCCTGCTTTTGGTTCGAGATTTGAAGTTCCAGGTCCTAGACATCCAGCATTTGGTCCAAGATTTGAAGCACCAAGTTCTAGACCTCCATTCATTGTAAGTGATACCATGGGTGATCAAGCCTCTGCTCCGAATGCTTGGCGTCCAATGCATCCTTCAAATATGGGGCCATCATCTAACACTGGTCTGCATAACCTGAGGCCGCCATTGCTTCCAAGATCTGGTGACATGGACATGGCATTGGCTATGAATGCAGGTGGTCCTGGGAATGGCTTTGGAGGCCCTTCAAATGGTCCTTTTCAAAGACAGGCTCTGTCATCAATGCCACAGCAGAATTTCAATCAAAACATTCCACATATTCCACCAACCAGCCAACAGATGTCACCACTGCCGAAACCTATTCAATCACCTCAGGACAAGCCTTCTTCACACCTGATGTACCCTTCAGCCCCGATCCCCTACTCACAAGCACCACCTTCTCTTGCATCGTTTAGGCAGGTTGGCCAACAGCAACTTCCTTCACATCAGATGCATGGTCTAAACGGACACTTTCCAGTTTCTCAACCTCAAGCTCAGCAGGTTGCTTCATCTGCTGCTGCAGCAGCCCAGGGCCATACCCCCCTAGATACCAGCTTGCGAACAAATACGACATTGACCACCATAACTCAACAGAAACTATCTACCTCTATGCAGCAGCAGCCGCTTCAGCCTCAGCATTCTCCATCCCAGTTGGCGCAAATGTTGTCACAACAAACTCAGACCTTGCAAGCGAGCTTTCATTCATCTCAGAAGGCTTTCTCCCAGCTTCAACAACAACTACAGATGATGCAACCATGTAGTCAAGGTTTAACGTTGCAGCAAAATGTAGAATCTATGAAAAAACAGTCTCAGTGGTCGGGGGCGGCTCCAACTGCAAATGTACCTTCATCCTTATCTGCTTCTGCTGTACCTCCAATAGGCCAGAACATAACCCCTGCAAAATGTGATTGGACAGAGCATGTATCTCCAGAAGGCTTCAAGTATTATCACAATAGTGTTACTGGAGAAAGTCGGTGGGAGAAACCTGAAGAGTTGACATTATCTGAACAGCAAAAGCCATCTGTTCAGCAATCTCAAAGTCAGTCACAGCCTCCAATATCACCTCAGCAATTTCCACAAATGCAACAATTGCAGCCTCAAGGCCAGCTCCAAGGGCAGGTGCTCCAGCAACAGTACCCGGCCTATGCAGTTGCAGGTCATCAAAATGCTCAGGGAATGTATACTATGCAAGAGTGGATGTGGAAAGATAAGCCAGCAGGGATTTGA 2220 0.4784 MIGFTLFAKLDRHRGDRYGNNYDSHPYRHSRAPSRFSDAPFNNRGGGASHHRQFDSPPRRSPGRGSGFRSPGFGSSDGFRPVSGEGPGGFGFNGRQGQPLSGQKRGFPFSGRGGSPDRFGGESFAKLFVGSVPRTATEEDIRPLFEQHGNVVEVALIKDRKTGLQQGCCFIKYASPDEADQAIKALHNQHILPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRVEDVYLMRDEKQQSRGCGFVKYSHRDMALSAINALNGIYTMRGCDQPLTVRFADPKRPRQGDSRGPAFGSRFEVPGPRHPAFGPRFEAPSSRPPFIVSDTMGDQASAPNAWRPMHPSNMGPSSNTGLHNLRPPLLPRSGDMDMALAMNAGGPGNGFGGPSNGPFQRQALSSMPQQNFNQNIPHIPPTSQQMSPLPKPIQSPQDKPSSHLMYPSAPIPYSQAPPSLASFRQVGQQQLPSHQMHGLNGHFPVSQPQAQQVASSAAAAAQGHTPLDTSLRTNTTLTTITQQKLSTSMQQQPLQPQHSPSQLAQMLSQQTQTLQASFHSSQKAFSQLQQQLQMMQPCSQGLTLQQNVESMKKQSQWSGAAPTANVPSSLSASAVPPIGQNITPAKCDWTEHVSPEGFKYYHNSVTGESRWEKPEELTLSEQQKPSVQQSQSQSQPPISPQQFPQMQQLQPQGQLQGQVLQQQYPAYAVAGHQNAQGMYTMQEWMWKDKPAGI 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1383 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 190 IPR000504 GO:0003723
Acco13g1383 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 284 IPR000504 GO:0003723
Acco13g1383 739 MobiDBLite consensus disorder prediction 666 700 - -
Acco13g1383 739 ProSitePatterns WW/rsp5/WWP domain signature. 635 660 IPR001202 GO:0005515
Acco13g1383 739 MobiDBLite consensus disorder prediction 343 374 - -
Acco13g1383 739 CDD WW 632 662 IPR001202 GO:0005515
Acco13g1383 739 Pfam WW domain 634 660 IPR001202 GO:0005515
Acco13g1383 739 PRINTS Paraneoplastic encephalomyelitis antigen family signature 277 294 IPR002343 GO:0003723|GO:1990904
Acco13g1383 739 PRINTS Paraneoplastic encephalomyelitis antigen family signature 125 140 IPR002343 GO:0003723|GO:1990904
Acco13g1383 739 PRINTS Paraneoplastic encephalomyelitis antigen family signature 221 236 IPR002343 GO:0003723|GO:1990904
Acco13g1383 739 PRINTS Paraneoplastic encephalomyelitis antigen family signature 236 248 IPR002343 GO:0003723|GO:1990904
Acco13g1383 739 MobiDBLite consensus disorder prediction 15 32 - -
Acco13g1383 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 296 IPR000504 GO:0003723
Acco13g1383 739 MobiDBLite consensus disorder prediction 292 320 - -
Acco13g1383 739 FunFam Flowering time control protein FCA 212 302 - -
Acco13g1383 739 MobiDBLite consensus disorder prediction 657 700 - -
Acco13g1383 739 SMART ww_5 630 662 IPR001202 GO:0005515
Acco13g1383 739 SUPERFAMILY WW domain 634 665 IPR036020 GO:0005515
Acco13g1383 739 FunFam flowering time control protein FCA isoform X2 120 211 - -
Acco13g1383 739 ProSiteProfiles WW/rsp5/WWP domain profile. 629 662 IPR001202 GO:0005515
Acco13g1383 739 MobiDBLite consensus disorder prediction 417 516 - -
Acco13g1383 739 Gene3D - 121 211 IPR012677 -
Acco13g1383 739 Gene3D - 212 305 IPR012677 -
Acco13g1383 739 MobiDBLite consensus disorder prediction 599 618 - -
Acco13g1383 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 206 IPR000504 GO:0003723
Acco13g1383 739 Gene3D - 629 677 - -
Acco13g1383 739 SMART rrm1_1 217 292 IPR000504 GO:0003723
Acco13g1383 739 SMART rrm1_1 126 202 IPR000504 GO:0003723
Acco13g1383 739 MobiDBLite consensus disorder prediction 417 448 - -
Acco13g1383 739 PANTHER RNA BINDING PROTEIN 59 540 - -
Acco13g1383 739 SUPERFAMILY RNA-binding domain, RBD 74 204 IPR035979 GO:0003676
Acco13g1383 739 MobiDBLite consensus disorder prediction 15 112 - -
Acco13g1383 739 MobiDBLite consensus disorder prediction 464 516 - -
Acco13g1383 739 SUPERFAMILY RNA-binding domain, RBD 216 319 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1383 Acco-ChrAcco13 13432379 13445096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1383 123 302 Eukaryotic Initiation Factors Gene Family AT1G71770 26.425 3.82e-15 77.4