Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1366 ATGGCATCTCCTCAAATTCCAAATGTTGAAGAACTTCATGAAGATAATTTTAATGTCAGATTTATTGTTGAAGCACATGTGGATTCACCTCATCCAGAAAATCCGGATATATTAATATTTGAAGCGTTTTTTCAATCTCCTTACATTATTCCTTGTGCCACAGTACTCCAAGATGTTCCAGAATTTCTTCGTATGACTGTATCGAACTATCTTTCCGAGAGACACACACATGCTTTGGCTTCAGAAATCATATCTTACTATCAAGAGACTACACTTGAAACTACTGGTCCTCGTCTGATACCCCTGGAAGTGCATTTTTATACTTATTATGCTTTTGGTCAGTATGTACCATTACTTTATGTCCTTCAACATAACGAAGGTCATCACAACAGGATAGATTTGGAGCTGACAGAAATGCATGTAGCCATAAATCAATCGATGCAACAAATTTCTCTGGTTCCAGCATCAAAAGAAGCTATTGCATCGCTCAAGAAAACAAAAACTCCCAACGAAGAAATAAACTCACACCTATGTAGTATTTGTATAGAAGATTTTGATGATGATGCCGAAGTTTCAGCAATGCCTTGTGACCATGTTTATCACAATACTTGTATTGTAAAATGGCTGCAAACAAGTCATTCGTGTCCATTATGTCGCTATCAAATGTCTACTGAATAG 678 0.3658 MASPQIPNVEELHEDNFNVRFIVEAHVDSPHPENPDILIFEAFFQSPYIIPCATVLQDVPEFLRMTVSNYLSERHTHALASEIISYYQETTLETTGPRLIPLEVHFYTYYAFGQYVPLLYVLQHNEGHHNRIDLELTEMHVAINQSMQQISLVPASKEAIASLKKTKTPNEEINSHLCSICIEDFDDDAEVSAMPCDHVYHNTCIVKWLQTSHSCPLCRYQMSTE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1366 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 224 IPR013083 -
Acco13g1366 225 SMART ring_2 178 218 IPR001841 -
Acco13g1366 225 CDD RING-H2_PA-TM-RING 178 219 - -
Acco13g1366 225 Pfam Ring finger domain 178 219 IPR001841 -
Acco13g1366 225 SUPERFAMILY RING/U-box 168 223 - -
Acco13g1366 225 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Acco13g1366 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 97 222 - -
Acco13g1366 225 SMART ringv_2 177 219 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1366 Acco-ChrAcco13 13180322 13180999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1366 142 225 C3H Transcription Factor Family AT1G18760 34.483 1.05e-16 74.3