Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1359 ATGGCTCGTGTTCCTTATCCATGCATTGATCCTTTTTATGATGGCTCTTTAGCATCTTATGGATCACAGGCTATTAATCAACCCCAAATGGTTCCCCAAATGCTGGGTCTTACATCTACAAGAGTTGCATTGCCACTGGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGAATACTGAGAAGGCGACAGTCCCGTGCAAAGCTTGAGGCTCAAAACAAACTTATCAAAAACCGTAAGCCATATCTTCACGAATCTCGGCATCGACATGCTTTGAACCGGGTTAGGGGATCAGGAGGACGCTTTCTGAGCACCAGACAGCTACAACAGTCTAATGCACAAATTGTGACTAGTGCCAATTCTGGTTCAGACTCTGTTAACTTGTATCAGAGGAAAGACACATCAGAGGTGGAGATTCATCCCTCAAGGACCGGTGGCACCGGAGAAAATGTATCTTCCATCTCGACCTGCTCTGACAGGACAAGTGGGTCCAGTAACAATGTGAATTTTAGGCAGCCAGAGTGCAAGTTCTTGGGGAACCCTCCAAACATGGGCAGTGCATTACAGTGCAGCGGCGGACTCACCTTTGGTGGTGGGTCCCAGCAACGTGTACCCATTGTCCGGTGA 642 0.4751 MARVPYPCIDPFYDGSLASYGSQAINQPQMVPQMLGLTSTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGSGGRFLSTRQLQQSNAQIVTSANSGSDSVNLYQRKDTSEVEIHPSRTGGTGENVSSISTCSDRTSGSSNNVNFRQPECKFLGNPPNMGSALQCSGGLTFGGGSQQRVPIVR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1359 213 ProSitePatterns NF-YA/HAP2 subunit signature. 55 75 IPR018362 GO:0003677|GO:0016602
Acco13g1359 213 PRINTS CCAAT-binding transcription factor subunit B signature 53 75 IPR001289 GO:0003700|GO:0006355
Acco13g1359 213 PRINTS CCAAT-binding transcription factor subunit B signature 84 107 IPR001289 GO:0003700|GO:0006355
Acco13g1359 213 SMART cbf3 49 110 IPR001289 GO:0003700|GO:0006355
Acco13g1359 213 MobiDBLite consensus disorder prediction 140 171 - -
Acco13g1359 213 MobiDBLite consensus disorder prediction 150 171 - -
Acco13g1359 213 Gene3D - 50 112 - -
Acco13g1359 213 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 53 107 IPR001289 GO:0003700|GO:0006355
Acco13g1359 213 ProSiteProfiles NF-YA/HAP2 family profile. 50 110 IPR001289 GO:0003700|GO:0006355
Acco13g1359 213 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 169 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1359 Acco-ChrAcco13 13060913 13062313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1359 13 123 CCAAT-HAP2 Transcription Factor Family AT1G54160 60.714 8.50e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Acco13g1359 CBFB_NFYA 1.8e-27 No_clan