Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1345 ATGGAGGACGATCGGGTGGAGAAGGAGGAAAAGGACAATGTGGGACCCATGGCTGGGGAGGAAGAAGAAGGAGAGGTAGGCTCAAGCTTGACGATGGAGAGGGTGGCTGTTGCTAAGAAGTTCATAGAGAATCATTACAGAGCTCAGATGAAGCTGATAAAAGATCGCAAAGAGAGGCGTTCAGTGCTGGAAAAGAAGTTAGCATCTTCTCGTGTACCAGAAGAAGAACAGATACATCAACTGAAGGATTTAGAGCGCAAGGAGACGGAGTATATACGGTTCAAACGCCACAAAATTTGTGTCAGTGATTTTCACCTTCTAGATATTATTGGGAGGGGAGCCTTTGGAGAGGTAAGACTTTGTCGCGAGAAAAAATCAGGCAATATTTATGCCATGAAAAAGTTGAAGAAGTCTGAAATGCTCAGCAGGGGGCAAGTTGAACATGTTAGAGCCGAGCGGAACTTATTAGCAGAAGTTGCGAGTCATTACATTGTGAAACTCTATTACTCCTTTCAGGATGCTGATTACTTATATCTGATAATGGAATATTTACCTGGTGGAGATTTAATGACTATGCTGATTAGAGAAGAAACTTTGACTGAAAGTGTGGCTAGATTTTACATTGCACAAAGCGTTTTGGCCATAGAATCTATTCATAAACACCATTACATTCATCGTGATATAAAACCTGACAACCTTCTGTTGGACAAAAAAGGTCATATGAAACTCTCTGATTTTGGTCTTTGTAAGCCACTTGATTGCACAAATTTATCATCAATAAATGAAGGTGAAGTCTTAGATGATGAGAACTTGATTGATACCATGGATATCGATGAATCCTTACCAAATTCTAAATGTGGAAGGCGCTGGAAAAGTCCCCTTGAACAACTTCAGCATTGGCAAAAAAACAGGAGGAAGTTGGCATTTTCTACAGTTGGAACGCCAGACTACATTGCTCCTGAAGTGTTGCTTAAAAAGGGATATGGTGTGGAGTGTGACTGGTGGTCTCTTGGTGCGATCATGTATGAGATGCTTGTTGGTTATCCCCCATTTTACTCTGATGACCCAGTAACCACGTGTAGAAAGATTGTACATTGGAAACATCATTTAAAATTTCCAGACGAGGCAAGGTTGACACCTGAGGCAATGAATCTGATCTGTAGGTTGCTTTGTGAAGCTGACCAAAGACTTGGTACTAGAGGGGCAGATGAAATTAAAGCACATCCTTGGTTCAGAGATGTTGTATGGGATAAACTCTATGAATTGGAAGCAGCATTCAAACCACAAGTCAATGGAGAGCTTGACACTCAGAACTTTATGAAATTTGATGAGGTTGAACAACCAAAACCAACTAGAACTGGATCCGGTCCCATCAGAAAGATGCTACTGACTCCTCAAGATCTTAGCTTTGTTGGTTATACATATAAGAACTTTGACGCGGTCAAGGGTATGCATCATACTATGGATAGGGGCATGAGGAGCATGTCATCACCTATTCCACCAGTCACTGAACCTCCACAGAGTGATTCTGGAAAAGACTATTCCTCCGGATATTCGAGCCGGTAG 1566 0.4176 MEDDRVEKEEKDNVGPMAGEEEEGEVGSSLTMERVAVAKKFIENHYRAQMKLIKDRKERRSVLEKKLASSRVPEEEQIHQLKDLERKETEYIRFKRHKICVSDFHLLDIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHYIVKLYYSFQDADYLYLIMEYLPGGDLMTMLIREETLTESVARFYIAQSVLAIESIHKHHYIHRDIKPDNLLLDKKGHMKLSDFGLCKPLDCTNLSSINEGEVLDDENLIDTMDIDESLPNSKCGRRWKSPLEQLQHWQKNRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKHHLKFPDEARLTPEAMNLICRLLCEADQRLGTRGADEIKAHPWFRDVVWDKLYELEAAFKPQVNGELDTQNFMKFDEVEQPKPTRTGSGPIRKMLLTPQDLSFVGYTYKNFDAVKGMHHTMDRGMRSMSSPIPPVTEPPQSDSGKDYSSGYSSR 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1345 521 Pfam Protein kinase domain 104 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1345 521 Pfam Protein kinase domain 308 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1345 521 CDD STKc_NDR_like 102 476 - -
Acco13g1345 521 FunFam Non-specific serine/threonine protein kinase 430 440 - -
Acco13g1345 521 SUPERFAMILY Protein kinase-like (PK-like) 101 474 IPR011009 -
Acco13g1345 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 446 - -
Acco13g1345 521 FunFam Non-specific serine/threonine protein kinase 188 255 - -
Acco13g1345 521 CDD MobB_NDR_LATS-like 38 99 - -
Acco13g1345 521 SMART serkin_6 104 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1345 521 MobiDBLite consensus disorder prediction 1 29 - -
Acco13g1345 521 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Acco13g1345 521 Gene3D Phosphorylase Kinase; domain 1 430 440 - -
Acco13g1345 521 MobiDBLite consensus disorder prediction 490 521 - -
Acco13g1345 521 Gene3D Transferase(Phosphotransferase) domain 1 310 429 - -
Acco13g1345 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Acco13g1345 521 Gene3D Phosphorylase Kinase; domain 1 63 187 - -
Acco13g1345 521 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Acco13g1345 521 SMART pkinase_C_6 412 477 IPR000961 GO:0004674|GO:0005524|GO:0006468
Acco13g1345 521 FunFam Non-specific serine/threonine protein kinase 65 187 - -
Acco13g1345 521 Gene3D Transferase(Phosphotransferase) domain 1 188 255 - -
Acco13g1345 521 ProSiteProfiles Protein kinase domain profile. 104 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1345 521 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1345 Acco-ChrAcco13 12868862 12878719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1345 20 492 AGC Kinase Gene Family AT4G33080 75.523 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Acco13g1345 Pkinase 4.1e-44 CL0016