Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1340 ATGAGATCAGTTGCCGTTGCTGTCAACGGTGGCTCCAGGGCCGGCAGGGGTAGCCGGCGAGCCGTCCAGTGGGCGGTGGAGAATCATATGCCTCAAGCCGATAGGTTTATTTTAGTTCACGTTATGCCCAGAATCTCTTCAATCCCAACCCCATCTGGAGAGTGTATCCCTGTTATGGATCTGGATGCCAAGGTGGCAGCAGCTTACATTCAGGATGTAAAGGAGAAGTTTGAGCAAATCTTTATTCCATTCAAGAAACTCTGCAAAGCAAGCACGGTTGAAACTTTGTTGCTGGAAGATGACAATCCTGCTACTGCACTACTTAGATGCATATCAGAATCAGAGATCCAAATATTAGTGTTGGGAACTGACTCCCCAAATTTTATAACAAGGAAGCTAAAAGGACCAGGGATACCAACGACTGTTCTAGGAAGTGCTCCTGACACTTGTGACATATATCTTGTTGCTAGAGATAGAATTATATCAAAATTAGCTGATTCTTCATCTTCACCCTCACGTGAGATTAGTTCTAGGGACTCTGTGTCTACACAAGGGAATACAGAAGATGTCGATGCACACTCTGGTAGAGAAATAACTGGATTTAATTCTCCCACAACAGGACCTGACTTTCTCATAAACAGATTCCCATCAATGTCAGAGTGGAGTTATATAGGTTCTCAAACATGTAGTCCTGCAAATTCTCTTCCCTCTATACATGAAGGCAATCTAGAAAGCTTTAGAGATGATGCTGAAACCGCAAGCATCCACTCTTTTGATTCCATGGCTTCTGCACAAATTGAACAACCAGTTATGCAAGAATTAAAGCAGCTGCAGCTGGAGTTACGGAATACTATTGCCATGTATAAACAGGTTTGTGAAGAGTTGGCTCTTTATCAAAGTAAGGTTCATTTACTTTCAGCTGAATATCATGAAGAATCAAGAAGAGTAAACGATTCCCTGAAAAGAGAGGAGAGTTTGAGAAAGATTGCTGCTGAAGAAAAAGAAAAGTATTTGAAAGTCATGAAGGAACTTGAGGAGGCGAAAATTAAGTTTGCGAAAGAATCCTATGAAAGGCAGATGGCTGAAATTAATGTCCTCAAAGAATCTGTAGAAAGGAAGAGAATAATTGATACATTGCTCTCAAGTGACAAGAGGTACAGAAAGTACACTATGGACGAAATCAAAGAAGCAACAGATAACTTCTCTAAGGATCTTTTAATTGGTGAAGGAGGTTATGGGAAGGTTTATAAGTGCAGCCTCGATCACACTACAGTAGCTGTAAAGGTTCTGCACCAGGATGCATTTAACAAGAAAGAGGAGTTTCTGAAGGAGGTTGAGGTTCTGAGTCAGCTACACCATCCACACATGGTTTTGCTGCTAGGGGCCTGTCCCGAAACTGGCTGCCTTGTTTACGAATACCTGGAAAATGGAAGCCTCGAAGACTATCTTTTCAACAACAGCGGGAAACCGCCACTTCCTTGGTACGTTCGATTCCGTATAGTTTTTGAAGTGGCCTGTGGGTTATCATTCCTGCATAATTCAAAGCCTGAGCCAATTGTTCATCGAGATATGAAACCAGGAAACATCTTGTTGGACAGAAATTATGTGAGCAAAATTTCAGATGTTGGATTGGCTAAGCTCCTTTCAGATGTCGTACCTGACAATATCACTGAGTACAGAGAATCTATCCTTGCCGGTACTCTGCATTACATGGATCCAGAGTATCAGAGGACAGGCACCGTTCGACCAAAATCAGATGTATACGCATTGGGAGTTATAACTCTTCAACTGATAACTGCTCGCCATGCACGAGGAGTCATTTTGGCCACTGAAAATGCTGTTAGAAATGGCTCCATCTCTCATATTTTAGATAAATCAGCTGGAGATTGGCCACTGACCGAGGCAGAAGAGTTGGCTCAAATCGCCCTAAGATGCTCTGCGCTGAGATGCAGAGATAGACCAGATCTTGATACTGAAGTTCTTCCACTGCTCAAAAGAATCTGTGATGTGGCAAATGCTACTGTAAAAGTGGGAAGAAATAGTAGCACTTGCCCACCAAGCCAATATTATTGCCCAATCCTTCAGGAAATAATGGATGATCCACATATCGCCGCGGATGGTTTTACCTACGAGTACAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTATCACCTGTAACTAAGCTTACAATGCAGCATTCTACACTGATTCCTAACCATGCTTTGCGTTCCGCCATTAAGGAGTGGAGATCAGGACAAAAGTGA 2268 0.4272 MRSVAVAVNGGSRAGRGSRRAVQWAVENHMPQADRFILVHVMPRISSIPTPSGECIPVMDLDAKVAAAYIQDVKEKFEQIFIPFKKLCKASTVETLLLEDDNPATALLRCISESEIQILVLGTDSPNFITRKLKGPGIPTTVLGSAPDTCDIYLVARDRIISKLADSSSSPSREISSRDSVSTQGNTEDVDAHSGREITGFNSPTTGPDFLINRFPSMSEWSYIGSQTCSPANSLPSIHEGNLESFRDDAETASIHSFDSMASAQIEQPVMQELKQLQLELRNTIAMYKQVCEELALYQSKVHLLSAEYHEESRRVNDSLKREESLRKIAAEEKEKYLKVMKELEEAKIKFAKESYERQMAEINVLKESVERKRIIDTLLSSDKRYRKYTMDEIKEATDNFSKDLLIGEGGYGKVYKCSLDHTTVAVKVLHQDAFNKKEEFLKEVEVLSQLHHPHMVLLLGACPETGCLVYEYLENGSLEDYLFNNSGKPPLPWYVRFRIVFEVACGLSFLHNSKPEPIVHRDMKPGNILLDRNYVSKISDVGLAKLLSDVVPDNITEYRESILAGTLHYMDPEYQRTGTVRPKSDVYALGVITLQLITARHARGVILATENAVRNGSISHILDKSAGDWPLTEAEELAQIALRCSALRCRDRPDLDTEVLPLLKRICDVANATVKVGRNSSTCPPSQYYCPILQEIMDDPHIAADGFTYEYRAIKAWLSKHNVSPVTKLTMQHSTLIPNHALRSAIKEWRSGQK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1340 755 MobiDBLite consensus disorder prediction 167 189 - -
Acco13g1340 755 SUPERFAMILY RING/U-box 685 751 - -
Acco13g1340 755 Pfam U-box domain 686 753 IPR003613 GO:0004842|GO:0016567
Acco13g1340 755 PANTHER OS02G0152300 PROTEIN 4 749 - -
Acco13g1340 755 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 374 473 - -
Acco13g1340 755 FunFam Os07g0541700 protein 474 562 - -
Acco13g1340 755 Gene3D HUPs 1 151 IPR014729 -
Acco13g1340 755 CDD RING-Ubox_WDSUB1-like 686 740 - -
Acco13g1340 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Acco13g1340 755 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 135 - -
Acco13g1340 755 Gene3D Transferase(Phosphotransferase) domain 1 474 682 - -
Acco13g1340 755 Pfam Protein tyrosine and serine/threonine kinase 406 657 IPR001245 GO:0004672|GO:0006468
Acco13g1340 755 MobiDBLite consensus disorder prediction 167 205 - -
Acco13g1340 755 CDD STK_N 3 157 - -
Acco13g1340 755 Coils Coil 274 294 - -
Acco13g1340 755 ProSiteProfiles U-box domain profile. 684 755 IPR003613 GO:0004842|GO:0016567
Acco13g1340 755 ProSiteProfiles Protein kinase domain profile. 401 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1340 755 ProSitePatterns Protein kinases ATP-binding region signature. 407 428 IPR017441 GO:0005524
Acco13g1340 755 SUPERFAMILY Protein kinase-like (PK-like) 384 657 IPR011009 -
Acco13g1340 755 Coils Coil 327 373 - -
Acco13g1340 755 SMART Ubox_2 688 750 IPR003613 GO:0004842|GO:0016567
Acco13g1340 755 SMART serkin_6 401 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco13g1340 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 755 IPR013083 -
Acco13g1340 755 Gene3D Phosphorylase Kinase; domain 1 380 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1340 Acco-ChrAcco13 12807141 12812552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1340 3 752 Plant U-box Gene Family AT5G57035 54.145 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Acco13g1340 PK_Tyr_Ser-Thr 1.1e-39 CL0016