LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g1329	ATGGAAGCATTCATCAGCGCAGGAGCGATGGGAAGAGAGAAAGGATTATGGTGTTGTTGGTGTTTAGTGTTGTGGCCCTCTGTGCTTCTAATGGCGGGAGTTGTGAGTTCTGAACTTTACAACAAAACCTGTACTTCTCAGTGTGGCATTATCACAAACATCTCTTACCCATTCAGACTACCACATGACCCACCCAACTGCGGCCTCCCCAATTACGAGCTAGCCTGTGAGAACAACGTCACTCTCCTTCATTTATATCGATATTATTATGATGGAACACACCGAGAGCTAGGAACATACAGAGTGGTGGGAATAAACTACCACAACTTGAGAATCAAACTCGTAGATCCAGGAATTCAGGCGGGCAATTGCTCATTCCTCCCTCGCTATTCCTTATCCCTATACGACTTCAAGTATAATACTCTTTACGATTATTATGAACCAACCAATTATACTCTAAACTACTACGGATGGACAGAATCTTTAGTATTCAAGCAGGTGGCGTACCTGAACTGCAGCGATCCGGTGAGGGACGACACAGCGTATGTGGATACGGCTCCTTGTGTGAAAGGAGGAGGCCATCTTTATGCCGTGGCTGGTGACTTGTTGGCTCCCCGGTTTCAACCTCAATGTCGTCTGGAATTTGTGACCCCTGTAGCCTCAGATTGGGAATTGTTGGTGCCTGATGGAATCAAGTCCTACGCTGATATTAACAAACTCCTTTCATTTGGATTTGAACTTTCATGGTGGGGACAAGCTTGTGCTGATTATAATTGTCCGGATGACACTGAATGCCGTTTCATCCCTGAAAATGGAAGCCTGTTTTGCTTTCGAGGGAGGATGAGGATCGTCTGTACAAGTCCCCTGCGAATATATTATGGATCTTGTAATTATCTCGAGGGAGTATGGAAAGGACTAGCCCGGGTAGCGAACATTGATCGAAGCGACTACACTTCTCATTATGATTCTGGGCCATCAAAGCTTCTGATCAAATTAGGAGTGTTCACTGGAAGATTTGTTTTGCCATATATCACGGTCAGATTTTTTATTGGTGTTGTACTGTTGTCTACTGTGTTGATCTATACATGCCGTAGAAGACATCTGTCAATATATGAAGATATTGAAGATTTTATAAGACTTCATGACCTCATTCCAATAAGGTACTCTTATAATGATTTGAAGACAATGACCCATAATTTCAAGAATAAGTTGGGTGAAGGAGGCTTCGCTACTGTGTATAAAGGAAAGCTAAGGAGTGGACCTGACGTTGCTATCAAAATGTTAGGTAAATCCAATAAAGCTAATAATGGCCAAGATTTTATGAGTGAAGTGGCAACTATTGGGAGGATACACCATTTCAATGTGGTACATCTTGTTGGGTTTTGTGTAGAAGGAACAAAACGTGCTCTTATATATGAATTTATGTCCCGTGGATCTTTGGATAAACATATTTTTTCAAAAGAAGAAAACATGTCCTTGAGTTGTCGTAAGATATATGAGATATCATTGGGAGTGGCTCGGGGAATTGCTTACCTTCATCATGGATGTGAGATGCAAATATTGCATTTCGATATCAAGCCTCATAACATTCTTCTTGATGAAAACTTCACTCCAAAAATTTCAGATTTTGGACTAGCATGTTTATATGCAATTGATGGTAATATTGCCACTTTGACAGCAAGAGGAACAATGGGATATATAGCTCCTGAGTTGTTCTACAAGAATATTGGAAGGGTGTCTCATAAGGTTGATGTTTATAGTTTTGGGATGCTTCTGATGGAAATGGCAAGTCAAAGAAGGAATTTGAATCCCCAGGCAGAACATTCAAGCCAACTATACTATCCCTTATGGATTTATGACCAATTTGATGATAATAAAGATATAGAAATGGAAGATTTGATGGAAGAAGAAAAGGGTTTAGTAAAGAAGATGTTCATAGTAGCACTGTGGTGCATTCAGCTAAAGCCTGTTGATCGTCCTTCAATGAACAAAGTAATAGAGATGTTAGAAGCAAATGATGTTTCAAGTCTTCCAATGCCTCCAAAACCATCTCTATATCCTAATGAGAGAGTTTTAGTTGATGACATATCCAGCTCTGATGAAACAGCATCCATTGTCTCTGTACATTCTCATAGTAGTATTGGCGAGGGAACAAGTAATGGAAATTAA	2169	0.4039	MEAFISAGAMGREKGLWCCWCLVLWPSVLLMAGVVSSELYNKTCTSQCGIITNISYPFRLPHDPPNCGLPNYELACENNVTLLHLYRYYYDGTHRELGTYRVVGINYHNLRIKLVDPGIQAGNCSFLPRYSLSLYDFKYNTLYDYYEPTNYTLNYYGWTESLVFKQVAYLNCSDPVRDDTAYVDTAPCVKGGGHLYAVAGDLLAPRFQPQCRLEFVTPVASDWELLVPDGIKSYADINKLLSFGFELSWWGQACADYNCPDDTECRFIPENGSLFCFRGRMRIVCTSPLRIYYGSCNYLEGVWKGLARVANIDRSDYTSHYDSGPSKLLIKLGVFTGRFVLPYITVRFFIGVVLLSTVLIYTCRRRHLSIYEDIEDFIRLHDLIPIRYSYNDLKTMTHNFKNKLGEGGFATVYKGKLRSGPDVAIKMLGKSNKANNGQDFMSEVATIGRIHHFNVVHLVGFCVEGTKRALIYEFMSRGSLDKHIFSKEENMSLSCRKIYEISLGVARGIAYLHHGCEMQILHFDIKPHNILLDENFTPKISDFGLACLYAIDGNIATLTARGTMGYIAPELFYKNIGRVSHKVDVYSFGMLLMEMASQRRNLNPQAEHSSQLYYPLWIYDQFDDNKDIEMEDLMEEEKGLVKKMFIVALWCIQLKPVDRPSMNKVIEMLEANDVSSLPMPPKPSLYPNERVLVDDISSSDETASIVSVHSHSSIGEGTSNGN	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g1329	722	ProSiteProfiles	Protein kinase domain profile.	398	685	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g1329	722	ProSitePatterns	Protein kinases ATP-binding region signature.	404	426	IPR017441	GO:0005524
	Acco13g1329	722	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	520	532	IPR008271	GO:0004672\|GO:0006468
	Acco13g1329	722	Pfam	Protein kinase domain	400	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g1329	722	SUPERFAMILY	Protein kinase-like (PK-like)	384	670	IPR011009	-
	Acco13g1329	722	Gene3D	Phosphorylase Kinase; domain 1	377	474	-	-
	Acco13g1329	722	Gene3D	Transferase(Phosphotransferase) domain 1	475	677	-	-
	Acco13g1329	722	SMART	serkin_6	398	669	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g1329	722	FunFam	serine/threonine-protein kinase PBS1-like	370	474	-	-
	Acco13g1329	722	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	371	693	IPR045874	GO:0004672
	Acco13g1329	722	Pfam	Wall-associated receptor kinase galacturonan-binding	44	116	IPR025287	GO:0030247
	Acco13g1329	722	FunFam	PR5-like receptor kinase	475	680	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g1329	Acco-ChrAcco13	12535117	12539888	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g1329	23	703	Receptor kinase-like Gene Family	AT5G38260	32.153	8.50e-96	308

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Acco13g1329		Pkinase	4e-46	CL0016