LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco13g1321	ATGGATATAACAAGAAGAACAAATTGCAGTGATTTTTCAAAACTGCGGATATTGGCAGAAGATTATTTTTATGGAGTTTTAAAAGGACTGTCCCAAATAGCAAGGAAGGGAATAATCGATCACCAAAATGACACAGATTTTATTCTAACAAATGTTGCAATCGAATTGGGAATAATTACTATAAAAGGTGTTGCGCCATACATCATAGTCAGATTTTCCATTGGCATCATATTCGTATCCATTTTGTTGATTTATACATACCGTAAAAGGCACATGTCAATGTTCGAAAACATCGAAGATTTCATACGACTTCACCACCTTATTCCAATAAGGTACTCCTATAAGGATTTGAAGACAATTGCAAAAGGTTTCAGCATAAAATTAGGTGAAGGAGGCTTTGGCACTGTATACAAGGGGAAATTAAGGAGTGGATATGATGTTGCTATCAAAATGTTGGGTAAATCTAAAGCTAATGGCCAAGACTTCATCAGTGAAGTGGCAACTATTGGGAGGATTCACCATGTAAATGTGGTACACCTTGTTGGATTTTGTGTGGAAGGAACAAAGCGTGCTCTTGTCTATGAATTCATGTCTAAGGGATCATTAGATAAATATATTTTTTCTAAACAAGAAAGCATTTCCTTGAGTTATCACAACATATATGAGATATCGTTAGGAGTGGCTCGTGGGATTGATTACCTTCATCATGGATGTGATATGCAAATATTGCATTTTGATATCAAGCCCCATAACATTCTTCTTGATGACAACTTCATTCCAAAGATTTCAGATTTTGGCCTAACAAGATTATATAATGTTGATAATAGTATTGTAACTTTAACCGCAGCAAGAGGAACAATAGGGTATATGGCTCTAGAATTATTTTACACGAATATTGGGGGAGTGTCGTATAAGGCTGATGTTTATAGCTTTGGAATGTTTTTGATGGAAATGACCAGCAGAAGAAGGAATTTGAATTCACATTGTGAACATTCAAGTCAACCTTACTTTCCGTTATGGATTTACGACCAGTTTGATGAAGAAAAAGATATAGAAATGGAAGATTTGACAGAGGAGGGAAAGAATTTAGCGAAGAAAATGTTCATAGTGGCACTATGTTGTATACAATTAAAGCCTAGTGATCACCCTTCAATGAGTAAAGTAATAGAGATGCTAGAAGCAGATGATGTTTCAAGTATTGAAATGCCTCCAAAACCCTCTTTGTATCCTAATGAACAAGTTTTGGTGAATGATGGATCCTCATCTAGCCAAGCAACATCCACTATCTCTCTACATTATTCTCCTAGTAGTTCAGGTGAAGGCACAAGTTGTGGGACATGA	1341	0.3579	MDITRRTNCSDFSKLRILAEDYFYGVLKGLSQIARKGIIDHQNDTDFILTNVAIELGIITIKGVAPYIIVRFSIGIIFVSILLIYTYRKRHMSMFENIEDFIRLHHLIPIRYSYKDLKTIAKGFSIKLGEGGFGTVYKGKLRSGYDVAIKMLGKSKANGQDFISEVATIGRIHHVNVVHLVGFCVEGTKRALVYEFMSKGSLDKYIFSKQESISLSYHNIYEISLGVARGIDYLHHGCDMQILHFDIKPHNILLDDNFIPKISDFGLTRLYNVDNSIVTLTAARGTIGYMALELFYTNIGGVSYKADVYSFGMFLMEMTSRRRNLNSHCEHSSQPYFPLWIYDQFDEEKDIEMEDLTEEGKNLAKKMFIVALCCIQLKPSDHPSMSKVIEMLEADDVSSIEMPPKPSLYPNEQVLVNDGSSSSQATSTISLHYSPSSSGEGTSCGT	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco13g1321	446	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	242	254	IPR008271	GO:0004672\|GO:0006468
	Acco13g1321	446	Pfam	Protein tyrosine and serine/threonine kinase	126	392	IPR001245	GO:0004672\|GO:0006468
	Acco13g1321	446	SUPERFAMILY	Protein kinase-like (PK-like)	106	393	IPR011009	-
	Acco13g1321	446	Gene3D	Transferase(Phosphotransferase) domain 1	197	402	-	-
	Acco13g1321	446	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	94	417	IPR045874	GO:0004672
	Acco13g1321	446	MobiDBLite	consensus disorder prediction	402	446	-	-
	Acco13g1321	446	MobiDBLite	consensus disorder prediction	413	446	-	-
	Acco13g1321	446	Gene3D	Phosphorylase Kinase; domain 1	98	196	-	-
	Acco13g1321	446	ProSiteProfiles	Protein kinase domain profile.	122	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g1321	446	FunFam	serine/threonine-protein kinase PBS1-like	91	196	-	-
	Acco13g1321	446	ProSitePatterns	Protein kinases ATP-binding region signature.	128	150	IPR017441	GO:0005524
	Acco13g1321	446	SMART	serkin_6	122	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco13g1321	446	FunFam	PR5-like receptor kinase	197	403	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco13g1321	Acco-ChrAcco13	12398803	12403360	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco13g1321	61	432	Receptor kinase-like Gene Family	AT4G18250	43.832	7.46e-101	314

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Acco13g1321		PK_Tyr_Ser-Thr	3.4e-45	CL0016