Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1318 ATGGGACCAAGAGAAGTTCTGTCTTTTTGTCCTCCTTTTTCTTCGATCAATTTGCTATTATCATCGTCAAAAGTCATGGCGGGAACAGCACCTGAGGGTTCACAGTTTGATGCTCGTCAGTTTGATACCAAGATGAATGAAATACTTACAGCTGATGGGCAGGATTTCTTTGCATCTTATGATGAAGTTTATGATAGTTTTGACGCTATGGGCTTGCAGGAGAATCTCCTGAGAGGCATTTATGCATACGGTTTTGAGAAGCCATCGGCCATTCAGCAAAGGGGAATTGTTCCCTTCTGTAAGGGACTTGATGTTATTCAACAAGCTCAATCTGGAACTGGGAAGACAGCAACATTTTGCTCTGGAATTTTGCAGCAACTTGAATATGGTTTGACGGAATGCCAGGCTTTGGTCCTAGCACCAACTCGAGAGCTTGCTCAGCAAATTGAGAAGGTTATGCGAGCACTGGGAGATTATCTAGGTGTAAAGGTGCATGCATGTGTGGGAGGAACTAGTGTTCGTGAAGACCAACGCATTCTCTCTAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGCCGTGTATTTGATATGCTGCGCAGGCAGTCACTTCGACCAGATTACATCAAGATGTTTGTATTGGACGAGGCTGATGAGATGCTCTCCAGAGGTTTTAAAGACCAGATATACGATATATTCCAGTTGCTGCCAAGCAAAATTCAAGTGGGAGTGTTCTCTGCTACTATGCCTCCAGAGGCCCTGGAGATCACAAGGAAATTTATGAACAAACCTGTTAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGAATAAAGCAGTTTCATGTCAATGTGGAAAGAGAGGAATGGAAGCTGGACACGCTGTGTGATCTTTATGAAACATTAGCTATCACTCAGAGTGTCATTTTTGTGAACACCCGAAGGAAGGTTGATTGGCTTACTGACAAGATGCGAAGCCGGGACCACACGGTGTCAGCAACCCATGGAGATATGGACCAGAATACTAGAGACATAATCATGCGGGAGTTCCGATCTGGTTCTTCCCGTGTTCTGATCACAACAGATCTTTTGGCACGTGGTATTGATGTCCAGCAAGTGTCTCTAGTTATTAACTATGATCTCCCAACCCAGCCTGAGAACTACCTCCATCGTATCGGTCGTAGTGGTAGGTTTGGGAGAAAAGGTGTCGCCATCAACTTTGTGACAAAGGATGATGAAAGAATGCTGTTTGACATCCAGAAGTTCTACAATGTGGTGATAGAGGAGCTGCCATCAAATGTTGCTGAACTCCTCTAA 1317 0.448 MGPREVLSFCPPFSSINLLLSSSKVMAGTAPEGSQFDARQFDTKMNEILTADGQDFFASYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLEYGLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPSNVAELL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1318 438 SMART ultradead3 84 281 IPR014001 -
Acco13g1318 438 FunFam Eukaryotic initiation factor 4A-II 53 272 - -
Acco13g1318 438 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 438 IPR001650 -
Acco13g1318 438 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 65 93 IPR014014 GO:0003724
Acco13g1318 438 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 266 IPR014001 -
Acco13g1318 438 FunFam Eukaryotic initiation factor 4A-III 273 438 - -
Acco13g1318 438 SMART helicmild6 318 399 IPR001650 -
Acco13g1318 438 CDD SF2_C_DEAD 278 408 - -
Acco13g1318 438 Gene3D - 55 273 IPR027417 -
Acco13g1318 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 419 IPR027417 -
Acco13g1318 438 CDD DEADc_EIF4A 69 267 - -
Acco13g1318 438 Pfam Helicase conserved C-terminal domain 291 399 IPR001650 -
Acco13g1318 438 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 212 220 IPR000629 -
Acco13g1318 438 PANTHER RNA HELICASE 50 422 - -
Acco13g1318 438 Gene3D - 274 438 IPR027417 -
Acco13g1318 438 Pfam DEAD/DEAH box helicase 90 251 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1318 Acco-ChrAcco13 12337053 12339994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g1318 26 438 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 763